pcdh1a (LOC108276538,LOC108437809,LOC107678039,LOC107708655,LOC107720713,LOC107564544)


Basic Information

Item Value
gene id pcdh1a
gene name LOC108276538,LOC108437809,LOC107678039,LOC107708655,LOC107720713,LOC107564544
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1982153 ~ 2053236 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943979.2
ttttttttttttgaggaaagaaaagaaacccgCCGGCATTCGCAGTCAGATAAGTATGGTATAACATTTTTTTGGGGGACACTTTTGATAAACTGCATCACATCCGAGTGAATACAGTCCCGTCCCCcaaccaccacctccaccaccaccacttccctcctctctctctctctctctctctctctctctcttctggaGAGGGAACATCTTCCGAAATGACTTCAGTTAAAGTGTGGATTCTCTGACTTGACACGACGCGAGTGCTGTCCTGTCGTGTTCCTCTGTTTAGAAACGTCAAGACTTTTCATACACCGTTTTAAAACTGTTCTTCATCTTGTATAATTTTATCACAGACATTTCCCAGAAGCGTATCTGCCTTATCCAAGCGGCCAGGCTTCAAGAGGATGGCGGAGGCGAATAAAACGGTCACTTAACGGATTTTGTTCATCGACGAGAaggattttgttgttgttcttgttcttgttcttgttgtttttcCGCCTCTTCATGGCTGGATTGTGTATATGAAAGGGGCtgtggcgttttttttttacagcgaCTTGAGTCTGGAGACACCCGAAAACAAGCAGTCGGCTAATCTCCATTCTTATAGCGAGACCCACTGAAGGGGACTGgaagtgaagaagaaaagatAAAGTGGTCCACGGAGACTAAGGTGCTACCTACCTGGGGCATCATGTACTTCTCAGTGGGATTGCATCTGCTATGGGCATTAGTGTTGAACTTTGGGCGTGGCACACTGGGGGGCATCCTGTACCGTGTGCGTGAAGAACAGCCGCCAAGCACCCTGATAGGCAGTCTAGCGGCTGATCAGGGCTTACCTGACTCTGGACATCTGTACAAGCTGGAGGTGGGCGCCCCTTACCTGCGGGTGGATGGCAAAACAGGGGAAATATTCACCACTGAGATCCCCATAGACAGAGAGACGCTGAAGGATTGTCGGATGAAAGGAAAGCCATGCTTTCTGGAGTTTGAGGTGTCTGTCACGGATCTCATCCAGAATCAAAGCCCCCGGCTGATTGAGGGACGGATTGAGGTGCTTGACATCAATGATAACACCCCACAGTTTCCCTCACCTGTCCTCACTCTATCTGTGCAGGAGAACACTCACATGGGAGCCACCTTCTCCATCCCACTGGCCACTGACAAAGATACAGAGCGTAACGGTGTAGCCGACTATACCCTCACTGCTGGACCAGAGGCTGTTGCACTCTTTGGCCTACAAGTGGCAGATGACAGGGGTGAGAAATTGCCTCAGCTCATTGTGATGGGAAACTTGGACAGGGAGTTGAAAGACTCCTATGACTTAACCATAAAAGTAGTGGATGGGGGAAGCCCACCTCGCTACAGTAGTGCCTTGCTAAGAGTCGTCGTCACTGATGCCAATGACAATGCACCTAAGTTTGAGAAATCGTCCTACGAAGCAGAGGTTTCAGAAAACAGTCCTGTTGGACACTCTGTATTACAGGTCAAGGCCAATGACTCAGATCTAGGTCCAAATGGTGAAATTGAATACATCATTCATCAAGCCAGTGATCCAGTGCCAAAGCTGCTACAGATTGACCGTTCCACAGGCATCATATATGTAAAAGGCCCGTTGGATCGTGAGGAGATCAACAGCTTGAAGTTTCACGTTATTGCACGGGACAAAGGTCCCTCACCTAAAAGCTCAACAACATATGTTTCTGTTGAGGTAACTGACCAGAATGACAATGCACCAGCTGTGGAGATCCGTGGTATTGGTCTTAGGACCCATAGCGATGGGGTGGCAAACATCTCAGAGGACATGCCAGTGGGCACTGCGGTGGCACTGGTGCAAGTGTCAGATAAGGATGAGGGAGAAAATGCTGTGGTGACCTGTGTGGTAGCAGGAGATGTTCCATTCCAGCTTCGACCAGCTGGCGATTCCTCTATTGATAACAAGAAGAAATACTTTCTGCAGACCACCACACCTCTGGACTTTGAGCGAGTCAGGGACTACCGGGTGGAGATAGTAGCTGTGGACTCAGGCAACCCAGCTCTGTCCAGCACCAACTCCCTGAAAGTCCAAGTGACTGATATTAATGACAATTCTCCCATATTCTCACCCCCGGTGTTTGAAATAGAGTTTGCTGAAGAGAACCAGCCTGGAGAGAAGGTTCTCGATGTCATTGCCGTGGATGCAGACAGTGGCACAAACGCAGAACTCATCTACAGCATTGTTGCAGACTCCTCAACAAGGGGGCTCTTTGAGATTGACCCTAGCACAGGTGAAGTACGAGCAAGGAGCCCACTTGACCGTGAGCACAAAGAACGTTATGAGTTCCGGGTTACTGCTGCCGACAAAGGTGTTCCTAGCCACAGGGGTACTGCTACTGTTGTTATCAAAGTACTGGATAGGAATGATAATGATCCCAAGTTTATGCTTAGCAGCTACAGTTTCTCTGTCCTCGAGAACATGCCGCCACTCAGCCCGGTCGGCATGGTGACTGTATTAGATATGGATAAGGGAGAAAATTCCCAAGTGCAGCTCTCTGTCGAACCAGATGTTGGAAAGTTTGTAGTACAGAATGGCACAGGAACAATCCTGTCAAGTATATCATTTGACCGGGAGAAAGAAAGCAGCTACAGTTTCCGACTCAAAGCAGTAGATGGAGGAGAACCCCCTAGATCATCTTATGTTGGTGTGACCATCAATGTACTCGATGAGAATGACAATGCACCTGTTATCACCAAACCTTCCAATTCTTCTTTCACACGTCTGTCTCCCCTGGCTGCACCTGATAGCGTCGTCGAGGTGGTAGAGGCAGAAGACATGGACTCTGGCTCCAATGCTGAGCTGGTCTATAATATTGCTGGGGGGAACCCCCATGAGCTCTTCTATATATCTCCGTCTGATGGAGAGATCAAACTTACCAAGGAACTCACTCGGAAACATGGAGGTCTGCATCGATTGGTCGTTAAAGTGAGTGATAGGGGTAAGCCTTCTCGCCATGCCATTGCCTTGGTGCACATTTATGTCAATGAGACCATTTCCAATGTCAGCCTGGTGGAGGGTCTAGTGGGACATAGCTTATACACTCCACTGGACACCGACATTGCGGGTGACCCTGACTATGGTCTAGCTGCTCAGAGAAGCAACATTCTCTATGGTAGTTTGGCTGGTGTGGCAGGAGTTGTCATGGTGATCATAGTGGTAGTCTTCATCAGACATCGCCTCCAAAGAGAAACCAAGAGCGGCTATCAAGCGGGCAAAAAGGAGACCAAGGACTTGTATGCACCCAAACAAGGACCAAAGAGCATTAAGggtaaaaaaggaagaaagggaaAGCCTCCAAAATCACCCAAACCTCTTGGAGAAGATGAAGAGGTCAGCCTCCAAAAGAGTCTGAAGTTCAACATTGATGGGGTTAATGACAGCCCTCGGATCCACCTGCCCTTGACCTACCCGCCTGGCAGCCCTGACTTGGGCAGGCATTACCGTTCAAATTCACCCTTGCCCTCCATTCAGCTTCAGGCCCAGTCTCCATCTGCTTCCCAAAAGCATCAGGCTGTCCAGGAGCTCCCTGCCACCAATACCTTTGTGGGAACAGAACGAGATGACAACTCTACTGGTTCTGACCAGTATTCGGATTACAGCTACAAGACCAATCAGCCAAAATACAGCACAAAATCGCTGCCGCACCGCAGAGTGACGTTCTCCACGGCCAATCCGGTGCAGGACGCTCAGGACTCGTCCCAGCAGAGTTACTATGACAGCGGCCTGGAGGAGTCGGAGACACCCAGCAGCAAAAGCTCGTCAGGGCCACGCCTCGGCCCGCTGGCACTGCCTGAGGAACACTACGAGAGAACCACGCCCGACGGTAGCATCGGAGAGATGGAGCACCCTGAAAAtgATGTTCGGTCGCTTCCCGACGTGGCCATGACGGGAACCTGCAGTCAGGAGTGCAGTGAGCTCGGCCACTCGGACGCCTGCTGGATGCCTGGTCAGCCTTCACCCGCCCGCAAAGCACGCACGCTGCCCAAACTCTCCACCTTCGTGCCTTACCAGGAGAGAGGAGGGACCCTGGGACGACTGGCCAATGGCGAGCCCCGGCCCCGCCTCCCGCCCTCGCGCAGTGCCTACGCCCCCAGCGACCACGCCCCCAGCGATCACGTCCCGATGGAGGAGGTGCCTCTGAGCGTCACCTCCGAGTTCCCGCCCACCAGTCCCACCTCTAACCACGCCCCCAAACGGGAAATATACCTGTGAACGAAGCGGCGATTGACCTCTCCACTGAGGAATGGAATGAAAATATCACTCGAATAGCAAATTCGGGCTGTtagtgaactttaaaaaaaagtgtggtaGAGTTGTacgtttatttatatttctatttatttattcacctaTGAATTCATCTATTTATTAccgtgagcttttttttttctttttcttttttcacctcccctcctccttctccatGAACCATGATGAAAGCGCTCGAAGACTTTCTGAGTGACTTTAGCTTCGCTAGCCTGTGGAATGTTTACCAGATCTTTCCGAACAGTGTGACCTGTGCTGTAGTGCCATAAGCCTGAAGCTCTCGCTCGGCTTCTTCTTCTCTGAGTCTCCGCTACTTCCTGGACCGGGAGTCGCGATGGAGTGGTCTTAGTACATGTACAGCGATGTAAATACATTTCTATGatgtgtatatgtgaatatGAGGAACAGGCTTGAGCTGagatcaaaaacaaaaagaaaaaaaatggtacaTTCCGAAATCTATCAGCCTGAGGAGCAGGTGTTGGTGCTTCACCGTCAGCTCCACTCCAGCTTaagtctgtgttgtgtgtgtgtgtgtgtgggtgggtgtgtgtgtttgctaggCTTGCTAGACTTCTGGAACTGCTGTATATGGGATACAAGTCGCTGCACACTATCACATACTTAaccagtgtgtgagtgtgtgtgtgagtatgcgtgagtgtgtgtgagcatgtttgGCACTGTGAACTCTAAACTCCACCCAGAAGGCAGGTAACgcttctctaacacacacagcctgttcCTTTACAAGTGAGGCGAGCTGGAAAGGCTTTTCTTTcgggaaaggaaaaaaatctgcacTGAGCCTCTGTGGCGTCTCAGCAGGATTACGGGACCGGACCTACCGACTGTCCCGTCCATCACAGGGCCTCACCACATGGctgttcttcattttttaatgtatccTTTTTATCATCGTCACGGCCTCGTGTTCTGAAACCTGTTTAGGTCTCAAGAACGTTTTTTCAAtgccttaaaaaaaagatatttgtaTCTAACAATCATAATCGTTGAGTTCGATTGATAATCTCGCCTGACCTCACGAGCATGTCAGTGGTGCATGTGTTTCCAGTCAGGAGTGACTCAAAGGTCACAAGCgaaatgacatgaaatgaaaCGAAATTGCCTCAatctatttattcattctttcaatTTCCACTGACCCAGTGTCCTTTCTCTAAATTGGACTGATTTCTGAAGGCAACTTATTAGCATAAACAGCTGGACAGTGCAGTTACAGGGAGGACTGCCCTTTTTATGTGTGATTACGGTAATGACACGACAAGTGTGGCTACTTTTCTCCGAAGCAAACTGCAGTCTAACACTGAGTAATCATCCGAGTGGTGCCGCTAAGCCCAGGAGCGTCACGGTGCGTTACGATATCTCCATCACTACGCTAACGTGACCTCCATGGTGCATgccagtgtgtatgtgagtgagtgtgtgtgtatctgtgagcAAGCAGTTGCAGTGCAGTGGCCATAGAACTAATTAGagactgggtgtgtgtgtgtgtgtgtgtgtgtgtttgtgcgaaCCCTCAGAGCTGGGAGACGATCGCCACACTAACTCACAGCTCCTACCTCATCGGCGCCCCCTCTGGCACCTTGCAGAGAATAATTAACACACAGAACATATGGACACGACTGTGATTCAATAAGGCGACCCATTACGGCGCCTTGCGGAATAAAAGCACATTACGCTGTTCTTTGAAGCCATTCCGTGACtgtgacaataaaaaaatacataaatacagtgAGAGGCATGATCTGGTGCAGTTAGCGCTTCTCGTCCGTTTCTCTGTGTGCCCAGCTCTGATGTGGCTAAGCGCAAGTTCTCTGACCTGAACATAAATCGGCTAGACCATTCTGCTGCCGAGAAtccgagtgtgtgtttaaaacacCACAGGCTGAGACTGCTTTTTCTcagaaaaatccaccctgaacaagtcgcatattaatctttataattaacaacATCCAAGATTCATTTGCTAATGAAAATCTGAGTTGACTGTTTCCACTTAATGGaatcctacattacccacaatgctgtgtgactacctgctgatggtgcagtgggatttagccctcactTCAGCTCTActtaaagagagcgatgcagcagtgctttagtcttttagtctgtccagctctctcacctcctcatctgtacactctgctcaaacagatcagcttccaaagcttcaactctCATGCTAATTACCATCGCGCTCGTATGTCACTAACTAGCCGAGCTGAGTCTCTGCTGAACACATcacatatatttcaatataaacacgTTTcatgtttcagggtggagttttccttgaAGATTTCCTGACACTGAATTAAAGTCAGAATTTCTGGGTTCGACTTTTTTCCACACTGACCTGAGACGTTTCGAATCACGGGTTCGATCTTTTGCGAATCCAGCCTCTTCTTCGGGGCAAGTCCTTTAGGCCGAATGTGAAAACTCTTTACTCGTCGtcgtttatttaaaaactggTGTTTAGACATGTGCTCTCTTGCTGTTCGGTGTCCGTAGCTGAGGAACTATGGGTGTGATACAGTCGTGGTGAGAGAGgaaagtttttatttcatttcttttcccaATGAACGCAGTGCTGTTTTGTGGCTAGCATCTCTAGAAGGTGTTCTGTACATAGACCTTTCTCCCCCCAGTGTGTGCCGTCGGGCTGCGGCCAGTTTAGCATGAATTCCAAAGATAATCGGTAGAAATCGTTTGCTGTTCTTCGCTAAGGTGTTAGTGGTGGACGAGAAAaccttctttttcctctctctgtttcgAAGTGAAAAACTCGAATCTCACCACACAGCCCCATCATCACTATTCACTGTTCACCCGAATCTAAAGACAGCTGCCTTGAAAGTATGTATTTTACAggagagttaaaaaaaatcgtTATCTTTAATTGTTGGTTATATTTATATAGGAATAAAAACTGCTTGTGATGCCCTgttttttgtacagttttatgtACATGCAAGTGAAGCTTTTTAAATCTCGCGACAAAAACGCTGACGGCATATAaaaatcgtaaaaaaaaaaaaaagtgtttattgaGACGTGCACATCTTTGCCTTGGTTGAGTTGATTCTTTGGCTGAGTCGGTGTGAATGTGGCCGTTCTATGCCTGCACCATAGTCGTTTCACTGGCTCCCACTTCCTGAGGGCTTCATCTGAAACTCTTTTCTGCGTTTATCGTGAACAGTGGGCCGTCCGATCCTCTCCGTTCGTTTGATTCCCGCGTGTTATGTTTCATTCTGTTTTCCGCATGTTGAGAATATACCCCTTGTAATAAGTCCTTCTTGGAAAAAAGagtttgtaataaaatgagT

Function

NR:

description
PREDICTED: protocadherin-1-like isoform X1

GO: NA

KEGG:

id description
K16498 PCDHD1; protocadherin delta 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943979.2 True 7671 mRNA 0.48 5 1982153 2053236

Neighbor

gene id symbol gene type direction distance location
avd LOC108277130 coding upstream 109011 1870659 ~ 1873142 (+)
fgf18b LOC108276546,LOC108437818,LOC103034963,LOC107742373,LOC107687415,LOC107552074 coding upstream 155831 1812599 ~ 1826322 (+)
LOC113524200 NA coding upstream 428464 1552268 ~ 1553689 (+)
LOC113524165 LOC108277141 coding upstream 459007 1512564 ~ 1523146 (+)
tlx3b LOC108276618 coding upstream 520929 1450158 ~ 1461224 (+)
LOC117599403 NA coding downstream 290425 2343661 ~ 2347385 (+)
smtlb sl,LOC108276625 coding downstream 597418 2650654 ~ 2653366 (+)
LOC113544866 glb1l2,LOC108433266 coding downstream 645008 2698244 ~ 2711113 (+)
slc37a4b slc37a4,LOC108276867,LOC107653717,LOC107743433,LOC107679531,LOC107565261,LOC107758618 coding downstream 668114 2721350 ~ 2728418 (+)
igsf5a NA coding downstream 714316 2767552 ~ 2782425 (+)
G261894 NA non-coding upstream 125300 1856652 ~ 1856853 (+)
G261848 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 non-coding upstream 201594 1775490 ~ 1780559 (+)
G261853 NA non-coding upstream 214169 1763838 ~ 1767984 (+)
G261647 LOC108276799,LOC108276792,LOC108276796,LOC108437803,LOC107586188 non-coding upstream 263417 1712537 ~ 1718736 (+)
G261643 LOC108276792,LOC108276799,LOC108276796,LOC108437803,LOC107688304,LOC105905981 non-coding upstream 277979 1682219 ~ 1704174 (+)
G262095 NA non-coding downstream 144634 2197870 ~ 2198075 (+)
G262102 NA non-coding downstream 163724 2216960 ~ 2217185 (+)
G262103 NA non-coding downstream 164250 2217486 ~ 2217846 (+)
G262201 NA non-coding downstream 250104 2303340 ~ 2303551 (+)
LOC117599402 NA non-coding downstream 398781 2452017 ~ 2471013 (+)
ponzr2 LOC108277330 other upstream 562664 1411986 ~ 1419489 (+)
G261503 NA other upstream 745021 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 869875 1101789 ~ 1112278 (+)
G261178 NA other upstream 1254428 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 1325944 603726 ~ 656209 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 691160 2744396 ~ 2747317 (+)
pcp4a NA other downstream 742255 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 1062933 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 1200080 3253316 ~ 3576137 (+)
triap1 triap1,LOC106568193 other downstream 3024617 5077853 ~ 5080643 (+)

Expression


Co-expression Network