LOC113544923 (tsku)


Basic Information

Item Value
gene id LOC113544923
gene name tsku
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 3013907 ~ 3016173 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943996.2
TTCATTGCAGGACAATGGCCATCCTCCTGGGAGGAACAGTTGCTGCACTTCTTGTTCTCCTTTTCACCAGAGTGAAGACGTGCCATCCCACGTGCCGGTGTGAGGAGCAAAGTTTCGGACTGTTCAACAGCTTCAGCCTGACCAAAGTGGACTGCAGTGGACTGGGACCAAACACAATTCCGGTTTCAATCCCTTTAGAAACTTCTTCACTGGATCTTTCCTCCAATGGCATCCATTCTATCGAGGGCGCTGTCCTCTCTGGACCGGGATACACCACCTTGTCTAGTCTCAACTTGAGCAACAACCTTATCTCTGTCATGAATGGAAGTGTTTTCTCCAAACTGCACTATCTGGAGATGCTAGATCTGAGCTGGAACTCCATCCAGAAACTTGTTGAAGGTTTTTCAGGCCTTCCCCTTGCCGAAGTAGATCTGAGCCACAACTCGATTCATGAAATCAACCTGAATATGTTTCAAGTTCAGGACCATGGAAGGCCTCTCAGTGTGGATCTCTCTTATAACTTGTTAATGACAGTTATCAGGAGTAAACTTTCACAACCTCTCAACATACAGAGCCTTAATTTAGCAGGAAATGAGCTCACTTCTGTGCCAAGCCTGCAGGACATCTCTTTACGGTTCCTCACCCTGGATGAAAACCCCATATCAGTCATTGATGAACAGAGTTTTGCTGGATTGAAATATCTCATCCACCTTTCTCTAAGCTCAATGCCTGTGTTACACACCATCAAACCTCAAAGTTTACAAGATCTCCAAAACCTCCAAGTGCTTGATCTTTCAAATAACAATAAACTTAAGACATTGAGTGCAGAGGCTTTTCGTGGCCTTACATCACTGCAGGAGCTCAATTTGTCGAAATGCTGGGTCACGTCTTTGCCAGCTAacatcctccagctcctcccgAGCATTAAGAGCATTGCTTTGGGGGAGGGAATAAACTGTTGGAGGATCCAGAAGCAGGAACAATTTCACAGACACATCACGCGGAGTAAAGCTAATGCAGCTCTGATCTGCGATGTGGCTGGTGTCATTTTGTGAGATGCAAAAGAACAAATAAGACTTTTCGATAAAAGAAATAGTTTGTACCTTAGCTATATTGTGAATGAGTTACTAGATTCAGCGTACTCTTTAAAATATTCCTATACTCCTGTGTTTGACTAAAGCTCATAACTAAGGACCGGGATCCTACAGGACCCACCAAAAAGTCACAGTAGCAGACGCTTTGCTTCTTTTTCCTGAAGATTGCTGGACAAACAaaggccatgttcattaacatgagagCATATATGGTGCTCATGCGACACATTTActgctttcatttattcatcttcagtaactgctttatcctggtcagagtcatggtggtttaaatgagAAAGTGAACAATTTGAATGTAATTGAGAGAGGCTGCTatatagctgtttatagctgctataacgtaagtgataacatagGAACTGGTTTCACTGATGTTCCATATCGCTAAATGTAACtcttaacaaagaaaattatGTGTTGTGCATgaacaaattacaaattgtaatcactggcaaactgctgtatgtggtgttataggaaaataatcaacattaggGTCCTAACATTAATGATGCATCATGTCAGGCTGAACTGCACCACTGTCGTtggttattttcttataactgcATGCCTTGAattgttttactccttacataagTTATTGTTGTATGCTGTTTGACATAAAACATGACCACAAAGTAAGTTTATTATTAAAGGAAACCacattgtgtgtattttctatCATATTTTACATAgggtatatattttatttcattagatCACATCACGTGAGCCGAGTGCAAGCCATTGTCAGTGCTTTAACCTTCTACAGCAACATGTAATATTCATGAGTCTTGTTGATGGATTTATTGTCATATTACCTTATACATAAAAGATTTGGCTCTTTTTTAACAAGTCAGACAAAGGCTCTTCTGTACGCAGAAACAAGGTCTTTTTTAttgttggctgtgtgtgtgtttttcatgtaaGGCCCATTATTACTGCCTGGGTAGAGGAATTATCACATGAATCAACCTGCATATTTAACCCAAGGCCTTTAGAAAAGCGGCATCCACCTAATTCAAGAACAGCTCATACTGCTTTCTAGTATGTGTGtatcattttaattacacaggtatattttgtttcattttgtattttcagaTGTCAGTAGCCTACCAGAGAAAGGATTATAATACCCTTGAAATAAAG

Function

symbol description
tsku Predicted to be involved in energy homeostasis and growth plate cartilage chondrocyte development. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including germ ring; margin; mesoderm; pectoral fin bud; and tail bud. Orthologous to human TSKU (tsukushi, small leucine rich proteoglycan).

GO: NA

KEGG:

id description
K08130 TSKU; tsukushi

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943996.2 True 2267 mRNA 0.40 1 3013907 3016173

Neighbor

gene id symbol gene type direction distance location
acer3 acer3,LOC107680329,LOC107653723,LOC107758701,LOC107743427 coding downstream 816 3003704 ~ 3013091 (-)
LOC113544733 mmp13 coding downstream 22573 2988712 ~ 2991334 (-)
LOC113544865 NA coding downstream 30577 2980594 ~ 2983330 (-)
LOC113544715 LOC108276915 coding downstream 36607 2974608 ~ 2977300 (-)
LOC113544739 LOC108276914 coding downstream 50820 2952096 ~ 2963087 (-)
serpinh1a serpinh1a,LOC108277285,LOC108435823,LOC107743426,LOC107680328,LOC107570353,LOC107583375,LOC107653702 coding upstream 2623 3018796 ~ 3024445 (-)
LOC113544941 samsn1 coding upstream 48016 3064189 ~ 3074453 (-)
LOC117599375 LOC108277124 coding upstream 58327 3074500 ~ 3083041 (-)
wscd1b LOC108276571 coding upstream 247240 3263413 ~ 3276731 (-)
bhlha9 bhlha9 coding upstream 293566 3309739 ~ 3311030 (-)
G262646 NA non-coding downstream 27232 2986455 ~ 2986675 (-)
G262598 NA non-coding downstream 100036 2913664 ~ 2913871 (-)
G262572 NA non-coding downstream 158240 2855054 ~ 2855667 (-)
LOC113544730 NA non-coding downstream 267376 2737833 ~ 2746531 (-)
G262381 NA non-coding downstream 458726 2532891 ~ 2555181 (-)
G262681 NA non-coding upstream 8688 3024861 ~ 3025212 (-)
G262728 NA non-coding upstream 124854 3141027 ~ 3141668 (-)
G263077 NA non-coding upstream 301904 3318077 ~ 3325821 (-)
G263117 NA non-coding upstream 346197 3362370 ~ 3414133 (-)
LOC113544916 NA non-coding upstream 855972 3872145 ~ 4007136 (-)
LOC113544717 LOC108276916,LOC108276915 other downstream 45725 2965655 ~ 2968182 (-)
si:ch73-1a9.3 NA other downstream 253722 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other downstream 289434 2712442 ~ 2724473 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other downstream 1233500 1775561 ~ 1780407 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other downstream 1602968 1265452 ~ 1410939 (-)
akap1a NA other upstream 551246 3567419 ~ 3627300 (-)
G263262 phf12 other upstream 1036816 4052989 ~ 4066383 (-)
npffr1l3 LOC108276623 other upstream 1900317 4916490 ~ 4926650 (-)
git2b git2,LOC108277167,LOC108435150 other upstream 2017695 5033868 ~ 5157309 (-)
tdgf1 LOC108276616,LOC108435131,LOC104953549 other upstream 2230761 5246934 ~ 5251500 (-)

Expression


Co-expression Network