LOC113544941 (samsn1)


Basic Information

Item Value
gene id LOC113544941
gene name samsn1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 3064189 ~ 3074453 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944032.2
GCTCGGCCCTATGCGTGTGTGTACAGACAGTGCTTGAGaagtgtgagggtgtgtggtGTATTTGGTCATGCATAGGAAAATTTGTTTCTAAAGACAAATAACGCATTTTTGAGAGTCATGCTTCAGAGGAGAGCTTCAAATGCCTCAGAGAAACCAAGGAATAAGCCAAAGCGCTCTTATAGCTTTGGCAGGTTCGACACGTCCAAAAATCAGTCCAAGCCGGAGGAACATGAAAGCACTTTGGGACAGGGTGCTGATGGCGAATCAGGCGAGGGAGATCATATCAAAGGGGGATTAGGGAAGAAGATGAAAGCCATCTCAATGACCATGCGCAAGAAGATGGGGAAGAAATATGCCAGAGCTCTGTCAGAGGAAACGGGGGAAGGTGTAGATGGAGACCAGGATGCTGAAGGAGTGGCTAATGTGAGTGAAGCTCCAGCCAAAGACAGCACAAAGTCCAGTAACTCAGTGGAAAGTCTCTTCAGTCTCCACAGCGCCCAAAGCTCCACCAGTAGTGGCATCACCAGTGGCTCTGAGGGCTCGTGTAATAGAGACAGTCTGAGGCTGGAGGAGGAAGTCCCTGACACCATTCAATTCTGTGGCAAAGCAAAAGTTCACACCGATTTCCTCCCGAGCCCATACGACACAGAGTCTCTAAAACTCAAGGTTGGAGACATGATCGACATCATCAGTAAGCCCCCCATGGGCATATGGACAGGGATGCTGAACGGCAAAGTGGGCAGCTTTAAGTTCATCTATGTGGACGTCCTGGCTGAGGAGCCTGCTCCAGTGCACAGGATGGGAAACcacaggagaagcagaagacCTCGACCCAAAACACTCCAGGAGTTCCTTGAGAGATTGAACCTAGAGGAGTTCATGTCCTCCCTGTTGCTAAATGGTTATCAGACGGTAGAAGATCTGAAGGATCTGAAAGAACAGCACTTGATTGAGCTGAATGTGACTGATCCTGAGCACAGACACAAATTGCTGGCAGCTACCGAGTATTTACACGACGTGGAGTCTAATAGTCAGAGAGAAGGGGAAGGTGAGGAAGCTCCCAAATCTCCGAGCGCAGTGGTGAAAGCTGAGCCGAACAACTGCCCCAGAGACTCTGGCTGCTACATCGCCTTGGACTGCTCTGACAACAGTAAAGAGGACGCAGAGAGCCACCTACCTGCATCTCTGTCCCCATCACCAGCTGAGGTGTAACCGCAGTGTATTCCTGTGCCTAGTGAATGTGACCTACATCTCACAAACAACATAGCCCTCGTGCAAATGGGTCAGCGATCAATCTGTGTTAATGTCAGGACCTTACTTTAGTTGTTTTTAGCGTGAATATGCAACCTCCGTTCCATTTTGAGCTGTCAGACAATTGTGCCATGATATATAGAAATACAATTATTCATAtggagtgtgtgcgtgtgtgtgtgtggggggaatTATTCACATAGATCACTCCTTTCAACATTCATCTGTGACTGTAAATCAGAAAGAACAAAAgcactgtaaatataatgtaaataatatgtaaaagaaatatattatgTATTCAGTGGATGAATAAAAGTCCTAAATAAACTTGATATAGTTTCTGCAA

Function

symbol description
samsn1 Enables phosphotyrosine residue binding activity. Predicted to be involved in negative regulation of B cell activation; negative regulation of adaptive immune response; and negative regulation of peptidyl-tyrosine phosphorylation. Located in nucleus.

GO: NA

KEGG:

id description
K23707 SAMSN1; SAM domain-containing protein SAMSN-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944032.2 True 1600 mRNA 0.47 8 3064189 3074453

Neighbor

gene id symbol gene type direction distance location
serpinh1a serpinh1a,LOC108277285,LOC108435823,LOC107743426,LOC107680328,LOC107570353,LOC107583375,LOC107653702 coding downstream 39744 3018796 ~ 3024445 (-)
LOC113544923 tsku coding downstream 48016 3013907 ~ 3016173 (-)
acer3 acer3,LOC107680329,LOC107653723,LOC107758701,LOC107743427 coding downstream 51098 3003704 ~ 3013091 (-)
LOC113544733 mmp13 coding downstream 72855 2988712 ~ 2991334 (-)
LOC113544865 NA coding downstream 80859 2980594 ~ 2983330 (-)
LOC117599375 LOC108277124 coding upstream 47 3074500 ~ 3083041 (-)
wscd1b LOC108276571 coding upstream 188960 3263413 ~ 3276731 (-)
bhlha9 bhlha9 coding upstream 235286 3309739 ~ 3311030 (-)
nf1b LOC108276969,LOC108435812,LOC106567758 coding upstream 557705 3632158 ~ 3699612 (-)
LOC113544747 LOC108276974 coding upstream 626017 3700470 ~ 3710581 (-)
G262681 NA non-coding downstream 38977 3024861 ~ 3025212 (-)
G262646 NA non-coding downstream 77514 2986455 ~ 2986675 (-)
G262598 NA non-coding downstream 150318 2913664 ~ 2913871 (-)
G262572 NA non-coding downstream 208522 2855054 ~ 2855667 (-)
LOC113544730 NA non-coding downstream 317658 2737833 ~ 2746531 (-)
G262728 NA non-coding upstream 66574 3141027 ~ 3141668 (-)
G263077 NA non-coding upstream 243624 3318077 ~ 3325821 (-)
G263117 NA non-coding upstream 287917 3362370 ~ 3414133 (-)
LOC113544916 NA non-coding upstream 797692 3872145 ~ 4007136 (-)
G263272 NA non-coding upstream 823394 3897847 ~ 3898067 (-)
LOC113544717 LOC108276916,LOC108276915 other downstream 96007 2965655 ~ 2968182 (-)
si:ch73-1a9.3 NA other downstream 304004 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other downstream 339716 2712442 ~ 2724473 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other downstream 1283782 1775561 ~ 1780407 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other downstream 1653250 1265452 ~ 1410939 (-)
akap1a NA other upstream 492966 3567419 ~ 3627300 (-)
G263262 phf12 other upstream 978536 4052989 ~ 4066383 (-)
npffr1l3 LOC108276623 other upstream 1842037 4916490 ~ 4926650 (-)
git2b git2,LOC108277167,LOC108435150 other upstream 1959415 5033868 ~ 5157309 (-)
tdgf1 LOC108276616,LOC108435131,LOC104953549 other upstream 2172481 5246934 ~ 5251500 (-)

Expression


Co-expression Network