LOC113544950


Basic Information

Item Value
gene id LOC113544950
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 3650949 ~ 3654016 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944049.2
ATATCTCCTTATGCTCATCACCAGCTGCTTCACAGTTCACACATTGACTTCATCCGATAACATCTCCCTGGTGGTCTTAAGAGGTCACAAACAGCAGTCAAAGATTTAGAGATACCTGACAGATTCCAAAATGTACCATTTTGTGTGCTTCATTCTGCTTGTGAGTCTGGAAGGACTAAAAGCACAAAACACATCTTCAGTCACCACAAACGTATCTACGACCTTGACTACAAATGCTTCAACACAAACGACACCGGCCATAACCTCAACTACGATGACGACCACTCCACTCAGCAGTAGCAAACAAGTGTCAGATCAGCCCTGTAAGGAAGCAGGCTGCCTATTCAACCTCAAGGACAAAAAGGAAATGACACTATGGTTGATAATTGCATCCCTCTTGCTAACCTGCCTTTTGATGCTGGTGATCATTACGTGCCTGGCCTGCAAACGCTGCCAAGGCACCAAGAACGACCAGCTGGTCGTGATGAAATCGTCCACAACCAGGAGAAACAGTGTAAATGGCGGGCTTTCTGAAACTGATATAATGTTGAAGGACTGCAGCTCAGTGAAAGTGGAGACTGAGACAAATCCAGATGAGCCACAGGAGCCAGAGGAGGTGGTCGAAGCAGCTGCCGAAGTCGGAAACCAGGTCTCCACCGAAGAGAACAAAAATTCAACCAATGACACCAGCGTGACCGCACCCACCCAAAAAGTCGACCAGTCTGGCGAAACAGATCTGAAGATGGAAGATTTGGAAAAGGCAGAATAGAAATCATCTTGGCATCACCAAAACACACGCAGCTCTGACTGCCAGTGGAATCAAATTCAAAGCCAaattctgtgtatgtgtgtagttttgcttttgtttctggGCAACCAATTTATCAGAGCTTTGTGCCGAAGTTAGAGATGACTTAATGTAATTGCTAACGTAACTGAATAATGTATTgcttatgaaaataataaatgactcaAGCAAATCACTGTTGAAAATTCCACGTTCTGTTGCGAGTTGTAATGCATAGAGTCAATAAAAAGTGTTGAATATTGAGCTGTGGCAAGCTCAACTGTATACAGACACTcaacaatgtgatttttttttaagtgcttttGAAAGTCAAGAAATGGATACATAAATATATCTCAAAATGTCTTGTCTCTTTTTAATCTGGTTCTGTAATCTGGGcaaaaatgatgatgaatatgTTATCTATGATTGAAGCAACTTTCATTAAAAGCTGCAAATGCAGA

Function

GO:

id name namespace
GO:0002521 leukocyte differentiation biological_process
GO:0048583 regulation of response to stimulus biological_process

KEGG:

id description
ko04611 Platelet activation
ko04662 B cell receptor signaling pathway
ko04664 Fc epsilon RI signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944049.2 True 1251 mRNA 0.42 2 3650949 3654016

Neighbor

gene id symbol gene type direction distance location
LOC113544811 NA coding upstream 325175 3318106 ~ 3325774 (+)
usp25 usp25,LOC107653727 coding upstream 472011 3150466 ~ 3178938 (+)
gdpd5a LOC108277122,LOC108435822 coding upstream 588142 3030274 ~ 3062807 (+)
igsf5a NA coding upstream 868524 2767552 ~ 2782425 (+)
slc37a4b slc37a4,LOC108276867,LOC107653717,LOC107743433,LOC107679531,LOC107565261,LOC107758618 coding upstream 922531 2721350 ~ 2728418 (+)
LOC113544949 LOC108276970 coding downstream 1641 3655657 ~ 3659058 (+)
myo18aa LOC108276885 coding downstream 177343 3831359 ~ 3891808 (+)
sez6a LOC108276888,LOC108441783,LOC106603277,LOC105890440,LOC105010768 coding downstream 321664 3975680 ~ 4041056 (+)
phf12a phf12 coding downstream 392261 4046277 ~ 4059813 (+)
LOC113544790 LOC108276818,LOC108433289,LOC107743482 coding downstream 411876 4065892 ~ 4068409 (+)
LOC113544951 LOC108276969 non-coding upstream 14284 3632261 ~ 3636665 (+)
G262852 NA non-coding upstream 27577 3622807 ~ 3623372 (+)
G262807 NA non-coding upstream 209355 3424044 ~ 3441594 (+)
G262800 NA non-coding upstream 231157 3400865 ~ 3419792 (+)
G262762 NA non-coding upstream 243056 3383153 ~ 3407893 (+)
G262872 NA non-coding downstream 11508 3665524 ~ 3667443 (+)
G262894 NA non-coding downstream 41035 3695051 ~ 3699577 (+)
G262946 NA non-coding downstream 136125 3790141 ~ 3792507 (+)
G263025 NA non-coding downstream 531743 4185759 ~ 4186254 (+)
G263439 NA non-coding downstream 631961 4285977 ~ 4286206 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 74812 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 509196 3116169 ~ 3141753 (+)
pcp4a NA other upstream 833686 2795491 ~ 2817263 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other upstream 903632 2744396 ~ 2747317 (+)
ponzr2 LOC108277330 other upstream 2231460 1411986 ~ 1419489 (+)
triap1 triap1,LOC106568193 other downstream 1423837 5077853 ~ 5080643 (+)
G264336 NA other downstream 2354784 6008800 ~ 6011902 (+)
LOC113544903 mphosph9 other downstream 2515877 6169893 ~ 6194681 (+)
G264948 NA other downstream 3412855 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 3462035 7116051 ~ 7126246 (+)

Expression


Co-expression Network