efnb3a (LOC108277042)


Basic Information

Item Value
gene id efnb3a
gene name LOC108277042
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1203832 ~ 1230875 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312283.1
TCGCGCGCGAGTCCCCCCTCGTCGTCAGTAGTGCGCGAGCGCTGAGCGGGAACGCACGGAGCCGCGCGAGCTCCTGCCTCGAGCTCTACATTTCccccattttgtttttttattcccaATTTCATGGAAGAAGCTTTTAGGGAATTTTTAGGTTAGGTGTTTTATTTGAGGCGAGCTGTGCTCCTTTTCCAGTCCCTCTGTGTGTCCTAACACCTGCCGgacattttctcttttatttcaggAGAACTGGCTGTGGAGAGAGAAGCGGTTTGGGACAGAAGCATTAACCTTCATCTGAGGAGGAAAAGTGGAGGAGAACTTTTCCTCTCAGTCTGGAGGATCATCAGATCTCCACCAAAATATTACACTTGGCCTTGATCTTGTCGATTTAgggaaatacagaaaaaaaaaaaaaaaagagctgaaacTTCTCCTGCTTCttctaaaacattttgggaaacCATCTTCAGATATGGGAATAATATGGATTTACTCTAACGTATAACTAATATCACTAGCTAACTCAAAGATGGAGAACTTTCTGGAGCGTTTTCTTACATGTTCTTCGTTTTGATGCCAGAAAACAGAAGAATCACCAAGTTCCTCTGGTGAGGAACTCATTGTGAAGAACAAACAATCCTTGAAGATCTACAGATGTGTCATTAGAGTCGATTTTGCTTCAATCTTCTCAGGCGTGGTCTTCACACTTTTTTGGTTCTCATACACATCACACCTTATAGGAGTTAATGAACTTCATGTTTATTGAAGGACCTCATAAAGTTGTTGGTGTTAAAGACCTCAGATTTGACGCTTTGAGGGATCGTAATAGCGTCACGTTTTTCTGAATAATCTCATGAACTTAATGAGCTTCATATTTCTGAAGGTTCTTGTGAACAGGCTCTAGAGGATGTGATTGAATTCACACTTTGAAGGATCTCATGAGCTTCATGCTTTGAAGGATAATGAACTCTACGCATTGAAGGAGCTCATGAACTTGCTCTGATCTACTCCGACTGCAGATTTTCGTATGCGCTCCTCCTCGGGTTTCTTTTGCAGGATGGAGAGAGGAGCTCAGAAACTCTCCGAATGTCCTCATGGACTGACGTTTTTAGTTATATTCCTCATGGAGAGCTTAACGGTCACAGCAGCCAACCTGGAGCCCATCTACTGGAACTCCTTGAACAGTAGgtttgGGGACGAGCGAGGTTACGTGCTGTACCCTCAGATGGGGGACCGTTTGGACCTGGTGTGTCCCGCGTCCCCTTCCCTGCCGCAGTACGAGTTCTATAAGCTGTACCTGGTGTCGAAGCGCGAGCAGGCGGACAGGTGCGAGCTGAGCGAAGACTCCAACCTGCTGCTCACCTGCGACAAACCCAACGCCGACACGCGCTTCACCATCAAGTTCCAGGAGTTCTCCCCCAACCTGTGGGGCCACGAGTTCAAGAACCTGCATGACTACTACATCATAGctacCTCGGATGGGACGAAGCAGGGGTTAGACAGCATGAGAGGGGGAGCATGTGCAACGCGAGGGATGAAGGTTGTGCTCAAAGTGGGACAGAGTGCATATGGACTTCCCCCCAAACCAAAACTCGATTCGGGTCGCTCTAGCAGCAAAACTCCagatCACGACGCGGACTCCCCGAACAGCGTGAACGGGGCCGAAGCGGGCGAGATGGACACAGGTGACGGCTCCGTCTCTTCCTCGATCACCGTGGTGATCTTCAGCGCAGTGGGCGGAGCTTTTGTCCTGCTGCTGGTTGCCGTGGTGATCGGGGTGGTGTGTTACCGCAGGAGGAAAGCCAAACACTCAGAAACACAGCGCCCTAGCCTATCTCTCTCCGCCCTCACGCCCAGAAGGGGCGGGGCCAACACTGCAGGAAACGCAGGAGTCATCGCGGGGGGTAACATGACCGGCGGCACAGAGcccagtgacatcatcatccCGCTGCGGACTTCTGACTCCGCCTACTGCCCGCACTACGAGAAGGTCAGCGGCGATTACGGACATCCGGTCTACATCGTACAGGAAATGCCTCCTCAGAATCCGGCTAATATCTACTATAAAGTATGAGGAGGGACCtggaactctctctctctctctcacacacacacacacacacacacacacacacacacacacactaaagactGAAGACTCTTCCTTTCTTCACAGAAACACGTCCTTATCGCACACGTCGTCGTGTGTCAAGTTTGCGCCTTTAGTTTGCTACAAGGCTAATgctgctaacaagtaatggaagcttatagccaccagtttagcatgtTACACTAAACCTGTGTGTATAAATCATCCCACAGAAGCTGAATCACTTCCTTCCTCAGCAGGCAGCTTGATGTCACTCGACACCAGCACGGGCTCAGGGACGGGGCAGGGCTTAGTCAGTTAGCGCTCAATGCTAAATGTAATTACGGAGTATTTATACGGTGTCTTTCTCAGTAGCGGcgagcgatatgacaaaaatatcatatcgcgATACTTGAAATTTTCACGATATGTATCAATATTTAGGTTTGgtaacaaaaacagcaaaacatcagcgtttcatttttaaatttaaaaa

Function

NR:

description
PREDICTED: ephrin-B3-like

GO:

id name namespace
GO:0021654 rhombomere boundary formation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312283.1 True 2585 mRNA 0.48 5 1203832 1230875

Neighbor

gene id symbol gene type direction distance location
kdm6bb kdm6b,LOC108277160,LOC105902372 coding downstream 44649 1138879 ~ 1159183 (-)
tmem88a tmem88,LOC108276534,LOC106608829,LOC106525123 coding downstream 69670 1128579 ~ 1134162 (-)
LOC113524202 NA coding downstream 105523 1098177 ~ 1098309 (-)
trnas-gcu_6 NA coding downstream 105953 1097798 ~ 1097879 (-)
trnat-agu_11 NA coding downstream 108158 1095601 ~ 1095674 (-)
gigyf1b gigyf1,LOC108277040,LOC108443343 coding upstream 4666 1235541 ~ 1260050 (-)
LOC117599374 NA coding upstream 105785 1336660 ~ 1337281 (-)
npm1a npm1a,LOC108277343,LOC108444574,LOC107676031 coding upstream 234681 1465556 ~ 1471706 (-)
kcnip1b LOC108277344,LOC108444575,LOC103024145,LOC107742366,LOC107552061,LOC107676032,LOC102788752,LOC107720696,LOC101158298,LOC107586147,LOC103363037,LOC101476742 coding upstream 241716 1472591 ~ 1496371 (-)
hrh2b LOC108276662 coding upstream 297110 1527985 ~ 1530147 (-)
G261676 NA non-coding downstream 149809 969913 ~ 1054023 (-)
G261686 NA non-coding downstream 205531 997641 ~ 998301 (-)
G261355 NA non-coding downstream 328055 657927 ~ 875777 (-)
LOC113524153 NA non-coding upstream 1488 1232363 ~ 1235521 (-)
G261748 NA non-coding upstream 92305 1323180 ~ 1323407 (-)
G261753 NA non-coding upstream 97696 1328571 ~ 1328776 (-)
G261758 NA non-coding upstream 103865 1334740 ~ 1334940 (-)
G261759 NA non-coding upstream 129264 1360139 ~ 1360361 (-)
lhfpl6 lhfp,LOC103046216,LOC107686123,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC108442104 other downstream 91439 1015807 ~ 1112393 (-)
LOC117599327 NA other downstream 171297 981406 ~ 1032535 (-)
si:ch211-266i6.3 LOC108276750 other downstream 189543 1006914 ~ 1014289 (-)
fhl1b fhl1b,LOC108444522,LOC107718794,LOC107701105,LOC107693928,LOC107548848 other downstream 887507 301010 ~ 316325 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other upstream 34577 1265452 ~ 1410939 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other upstream 544686 1775561 ~ 1780407 (-)
si:ch73-1a9.3 NA other upstream 1448800 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other upstream 1481567 2712442 ~ 2724473 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 1734780 2965655 ~ 2968182 (-)

Expression


Co-expression Network