LOC113524167 (thap12)



Basic Information


Item Value
gene id LOC113524167
gene name thap12
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 999241 ~ 1006203 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_034312318.1
GCGCAAAGCATTGTGGGAAGGAGGCGAATTCTTCGTGTTGACTCCTCCAGGCCACACAAAGCACTAGAGTGCCGAATAAATTCACCAATTTCCATTGAATTAATCACAAGAACTGgataaaaaaatagataaaataaaagtttttggtttggaagtttttttttcaacccaGGCGCGCGATGCCGAATTTCTGCGCGGCGCTGCACTGTTCCCGGATGAGCTCCCACTCCGTGCTGGCTTTCTTCAGGTTTCCGCGGGATCCGGAGAGgtgtaagAAGTGGGTGGAAAATTGCAGTCGGTCAGATCTGAGAGATAAAACGCCAGAACACCTGAACAAGTACCACAGACTGTGTGCCAGACACTTTGAGCCCGATCTGATCTTAAAAACCagtCCGTTCAGGACGGTTCTGAAGGACACGGCGATCCCCACCATCTTCGACCATCCCAACTGCAAACGGACAAACGAACAGcAGGAAGAAGAGAACACGCCGCAGGCTAAAGTGCAGAGAGTGGAGGAGAATCAGGACAAGGATGAGGAGAATGCGACAGAGAGCGCAAACGGCCGAGAGGCTCCGGAAGAACCCCGGGTCTTGGACAAGGACCGGGATCAGCGCGAGTATCTCCGGTCCCTGTTTGACGTCGTGGTGATGATGGGACGGCAGAACATCCCCCTGCAGGGCCACTCCGATAAAGAGCCGAGGAGCAAAGCGTTCACTCCGAGCAACTTCCAGGCGCTGCTGGAGTTCCGCATCAACGCCGGCGACGAGGCGCTCCGGAGGAGGTTCGAGACGTCGCCCGCCAGTCTGGAGTTCTGCTCGTCCACGCAGCTGAGCCAAATCCTGGAGGTGGGCGAGAAGTGCGTTTGCGAGGAGCTGCTCTCCGAGGTGAAGGAGGCACGCTTTTTCTCTCTGGTCATGGAGAACGTCGTGGAGATCGCCGGGGAGAACAGAATCCCAACGTTCGTCCGCTTCGTGGATCAGAACAACTGTCTGCGCGAGGAGTTCTTAGGATTCCTGCTCTTCGAAGGAGACGTGGAAAGCATCGTCGAAAACCTCTGCGCCGAAATATCCGAGAAGAACGGGCTGAGCATGGAGGACTGCAGAGGGCAGGCGTACTTCAGCGCCGGCGTCCACGCGTCCAAAGCGAAAGCCGTCGCCGCGAAACTGAGCGAGCGATACCCGTTAGCGGTGCTCACCCCCAGCTCCGGCCACGCCCTGAACATCAGCCTGGCCAACAGCATGGACTTCACGAGCGTGCACCTCGTCATGTCGACCCTGAAGAAGATCGACGCCTTCTTCGGCAGGTCTCCTCTCCTGCTGGATCAGCTAGAGAGCGCCATTTCGATTTATTACCAGGGGAACGAGGAGAAGGCGAGCGCCCTCAAGCAGGCGTGCCGCACCGACTGGACGCAGCAGCACGACGCCTTCGAGGTGGCCGTCGACCTCCTGGAGTCTCTGCTCCTCTGCGTGGACAGCGTCCACGACAACGAGGAGCTGAAGTGGAGCGACGAGATCGCACACGAGGCCTTCGTCGTCTCCGAGGCGCTGGCGGACTTCGAGTTCGTGATGACGCTCGTGGTCTTGAAGAACACGCTCTCGTTTTCCAGGGCGTTTGGGAAGAACCTGCAGGGGCAAACCAGCGAGGTCTTCTTCGCCGCCAACAGCCTGACGGCCGTCCTGCACTCGCTCAACGAGGTCCTCGAGAACATGGAGGTGTATCACGAGTTCTGGTTCGAGGAAGCCGTGAACCTCGCCGCCGCCTTGGAGATCCCCGTCAAAATCCCCAGGCTCTTCTTTAGGAAGCAGCGTCCCGACGCCGGAGACGACATCCAACCCGAGACCTACTACAAGATCCACCTGACGATCCCGGTGGTCACTCAGGTGATCAAGGAGCTGAGCGAGTTCTTCTCCGAGAACCACCTCAACGCGCTCCGGTCCCTGTCCTTCGTCCCGGCGATCATGTCGCAGCTCAAGTTCAACACGGAGGAGAACAGCGCCGACGTCTACAAGAACGACCTTCCCAACCCGGAGACGCTTCCGACCGAGCTCAACTGCTGGAAGATCAAGTGGAAGCACGGCACCAAGAACGTCACGCTGCCCTCCACCATCTACGAGACGCTCCAGCTGTCCGACGTCAAGTTTTTCCCCAACGTGTGCGCGCTCCTCAAGGTCCTCCACTGCCTCCCGGTGCTGTCGCTCACGGAGGAGAAGTGCGGCGAGGCGAGGAGGCGTCTGACGGCGTACCTGCGGGACACGCCCCCCGAGCACAGACACAAGAGCCTGGCGCTGTTCAGCGTTAACTGCGCCGTGAGGGTGGACGTGGACCTGATGGTGGAGGCGTATCTCTCGGCGTATCCGGACAACGAGGCCACGGAGGAACCTGCGTGATCGACGCGAATGCGAATTAGCGCTCGGTGTAACGTTGTTGGTTTGGCCAGTGATTTAGCAGAGTGACAGGTGTTGCTATGGGAACAAGGGCGGagtttaaattatatttgatcagccaatcacaactcTGATCTCATCGCATCACCACTgggtttaaatgttttctgctcGACACAACGCTTAGTgacaatctttctttctttctttctttctttaacgtttctttctttcttttttctttccttctgtaatctatttttctttttctttctttcttctttactctcatacatttc
>XM_034312319.1
CGCGCAAAGCATTGTGGGAAGGAGGCGAATTCTTCGTGTTGACTCCTCCAGGCCACACAAAGCACTAGAGTGCCGAATAAATTCACCAATTTCCATTGAATTAATCACAAGAACTGgataaaaaaatagataaaataaaagtttttggtttggaagtttttttttcaacccaGGCGCGCGATGCCGAATTTCTGCGCGGCGCTGCACTGTTCCCGGATGAGCTCCCACTCCGTGCTGGCTTTCTTCAGGTTTCCGCGGGATCCGGAGAGgtgtaagAAGTGGGTGGAAAATTGCAGTCGGTCAGATCTGAGAGATAAAACGCCAGAACACCTGAACAAGTACCACAGACTGTGTGCCAGACACTTTGAGCCCGATCTGATCTTAAAAACCagtCCGTTCAGGACGGTTCTGAAGGACACGGCGATCCCCACCATCTTCGACCATCCCAACTGCAAACGGACAAACGAACAGGAAGAAGAGAACACGCCGCAGGCTAAAGTGCAGAGAGTGGAGGAGAATCAGGACAAGGATGAGGAGAATGCGACAGAGAGCGCAAACGGCCGAGAGGCTCCGGAAGAACCCCGGGTCTTGGACAAGGACCGGGATCAGCGCGAGTATCTCCGGTCCCTGTTTGACGTCGTGGTGATGATGGGACGGCAGAACATCCCCCTGCAGGGCCACTCCGATAAAGAGCCGAGGAGCAAAGCGTTCACTCCGAGCAACTTCCAGGCGCTGCTGGAGTTCCGCATCAACGCCGGCGACGAGGCGCTCCGGAGGAGGTTCGAGACGTCGCCCGCCAGTCTGGAGTTCTGCTCGTCCACGCAGCTGAGCCAAATCCTGGAGGTGGGCGAGAAGTGCGTTTGCGAGGAGCTGCTCTCCGAGGTGAAGGAGGCACGCTTTTTCTCTCTGGTCATGGAGAACGTCGTGGAGATCGCCGGGGAGAACAGAATCCCAACGTTCGTCCGCTTCGTGGATCAGAACAACTGTCTGCGCGAGGAGTTCTTAGGATTCCTGCTCTTCGAAGGAGACGTGGAAAGCATCGTCGAAAACCTCTGCGCCGAAATATCCGAGAAGAACGGGCTGAGCATGGAGGACTGCAGAGGGCAGGCGTACTTCAGCGCCGGCGTCCACGCGTCCAAAGCGAAAGCCGTCGCCGCGAAACTGAGCGAGCGATACCCGTTAGCGGTGCTCACCCCCAGCTCCGGCCACGCCCTGAACATCAGCCTGGCCAACAGCATGGACTTCACGAGCGTGCACCTCGTCATGTCGACCCTGAAGAAGATCGACGCCTTCTTCGGCAGGTCTCCTCTCCTGCTGGATCAGCTAGAGAGCGCCATTTCGATTTATTACCAGGGGAACGAGGAGAAGGCGAGCGCCCTCAAGCAGGCGTGCCGCACCGACTGGACGCAGCAGCACGACGCCTTCGAGGTGGCCGTCGACCTCCTGGAGTCTCTGCTCCTCTGCGTGGACAGCGTCCACGACAACGAGGAGCTGAAGTGGAGCGACGAGATCGCACACGAGGCCTTCGTCGTCTCCGAGGCGCTGGCGGACTTCGAGTTCGTGATGACGCTCGTGGTCTTGAAGAACACGCTCTCGTTTTCCAGGGCGTTTGGGAAGAACCTGCAGGGGCAAACCAGCGAGGTCTTCTTCGCCGCCAACAGCCTGACGGCCGTCCTGCACTCGCTCAACGAGGTCCTCGAGAACATGGAGGTGTATCACGAGTTCTGGTTCGAGGAAGCCGTGAACCTCGCCGCCGCCTTGGAGATCCCCGTCAAAATCCCCAGGCTCTTCTTTAGGAAGCAGCGTCCCGACGCCGGAGACGACATCCAACCCGAGACCTACTACAAGATCCACCTGACGATCCCGGTGGTCACTCAGGTGATCAAGGAGCTGAGCGAGTTCTTCTCCGAGAACCACCTCAACGCGCTCCGGTCCCTGTCCTTCGTCCCGGCGATCATGTCGCAGCTCAAGTTCAACACGGAGGAGAACAGCGCCGACGTCTACAAGAACGACCTTCCCAACCCGGAGACGCTTCCGACCGAGCTCAACTGCTGGAAGATCAAGTGGAAGCACGGCACCAAGAACGTCACGCTGCCCTCCACCATCTACGAGACGCTCCAGCTGTCCGACGTCAAGTTTTTCCCCAACGTGTGCGCGCTCCTCAAGGTCCTCCACTGCCTCCCGGTGCTGTCGCTCACGGAGGAGAAGTGCGGCGAGGCGAGGAGGCGTCTGACGGCGTACCTGCGGGACACGCCCCCCGAGCACAGACACAAGAGCCTGGCGCTGTTCAGCGTTAACTGCGCCGTGAGGGTGGACGTGGACCTGATGGTGGAGGCGTATCTCTCGGCGTATCCGGACAACGAGGCCACGGAGGAACCTGCGTGATCGACGCGAATGCGAATTAGCGCTCGGTGTAACGTTGTTGGTTTGGCCAGTGATTTAGCAGAGTGACAGGTGTTGCTATGGGAACAAGGGCGGagtttaaattatatttgatcagccaatcacaactcTGATCTCATCGCATCACCACTgggtttaaatgttttctgctcGACACAACGCTTAGTgacaatctttctttctttctttctttctttaacgtttctttctttcttttttctttccttctgtaatctatttttctttttctttctttcttctttactctcatacatttc

Function


symbol description
thap12 Predicted to enable DNA binding activity; metal ion binding activity; and protein dimerization activity. Predicted to be involved in negative regulation of cell population proliferation and signal transduction. Predicted to be located in nucleus.

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_034312318.1 True 2683 mRNA 0.56 5 999241 1006202
XM_034312319.1 False 2681 mRNA 0.56 5 999241 1006203

Neighbor


gene id symbol gene type direction distance location
si:dkey-250d21.1 LOC108276748,LOC108442106 coding downstream 2446 987090 ~ 996795 (-)
wnt11 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107751408,LOC107747044 coding downstream 38427 940503 ~ 960814 (-)
map6a map6 coding downstream 238170 745853 ~ 761071 (-)
zbtb21 zbtb21 coding downstream 272859 721125 ~ 726382 (-)
rad51c rad51c coding downstream 283099 710086 ~ 716142 (-)
foxo1b LOC108277356 coding upstream 46748 1052951 ~ 1081289 (-)
ap4m1 ap4m1,LOC107702797,LOC107720677,LOC107554303,LOC107742404 coding upstream 75666 1081869 ~ 1090531 (-)
trnat-agu_11 NA coding upstream 89398 1095601 ~ 1095674 (-)
trnas-gcu_6 NA coding upstream 91595 1097798 ~ 1097879 (-)
LOC113524202 NA coding upstream 91974 1098177 ~ 1098309 (-)
G261686 NA non-coding downstream 940 997641 ~ 998301 (-)
G261355 NA non-coding downstream 123464 657927 ~ 875777 (-)
G261380 NA non-coding downstream 196553 802305 ~ 802688 (-)
G261374 NA non-coding downstream 203931 792912 ~ 795310 (-)
G261309 rad51c non-coding downstream 283100 665414 ~ 716141 (-)
LOC113524153 NA non-coding upstream 226160 1232363 ~ 1235521 (-)
G261748 NA non-coding upstream 316977 1323180 ~ 1323407 (-)
G261753 NA non-coding upstream 322368 1328571 ~ 1328776 (-)
G261758 NA non-coding upstream 328537 1334740 ~ 1334940 (-)
G261759 NA non-coding upstream 353936 1360139 ~ 1360361 (-)
fhl1b fhl1b,LOC108444522,LOC107718794,LOC107701105,LOC107693928,LOC107548848 other downstream 682916 301010 ~ 316325 (-)
si:ch211-266i6.3 LOC108276750 other upstream 711 1006914 ~ 1014289 (-)
lhfpl6 lhfp,LOC103046216,LOC107686123,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC108442104 other upstream 9604 1015807 ~ 1112393 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other upstream 259249 1265452 ~ 1410939 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other upstream 769358 1775561 ~ 1780407 (-)
si:ch73-1a9.3 NA other upstream 1673472 2679675 ~ 2760185 (-)

Expression



Co-expression Network