ap4m1 (ap4m1,LOC107702797,LOC107720677,LOC107554303,LOC107742404)


Basic Information

Item Value
gene id ap4m1
gene name ap4m1,LOC107702797,LOC107720677,LOC107554303,LOC107742404
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1081869 ~ 1090531 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312326.1
CCTGATTCCGGGTGATGCTTGTGAACTGAAGTGTACTTAAATGAACTCAAACATTAAGCAAATAAGTTACGTGTGAAAATATCCGTGTTGAAACGCGTGGAATTCTGAAAACTCTTGTCAATCGTGCTAACTATCTCGGAACGTTATGTACTTGCATTTCAAACAGACAACTTAACGTTAGCCAACAACTTTCGGACTTCATTCTCTTCAGTTGGtcctttaaaaaatgtttgcattatattttgttaaaattataCCTGTTAAAATTCAATCTGACTGAAATAACTGAAATTTCATATTACAATATACGATGTTGTGTGTTAGCGAAGCAGATTTTTAATCAGGCGCATATGATAGCTACACAAAGGGTCCTACAGATGCCGGAAGTACAGGATCACATACGCcggttgttgttattgttgtagcGTAGCTTCCTAATATCGGTATAATGATAGTTTTTTGTTGGTTtgatgtttataaataaatgatgttgTTTTCCGGAAGAGTTTAAGTCTGATTCTGATGGCATGTAGTACAGAAATATTCTGATGTAAAGTGGAATTAGCGAGCTAGCAGAGATTATACTGGAGAAAATGATTTCGCAGGTGTTTATTCTGTCATCAAAAGGCGACCATCTGATCTACAAAGACTTCCGTGGTGAAGTTGAAAAAGACTCCATGAGCACGTTTTATGAGATGGTGTCGTCTCTGAGCGGAGATCAGCCTCCTGTAGTCATGAGTCACAAAGGTGTGAACTTTATTCACATCCGACACGCTGGACTTTACTGGGTCGTGTCTACGAAGACGGATCCTTCTCCGTTCACTGTTGTCGAGTTTCTTAACAGGCTTGTCGCTCTGATTAAGGATTACTGCGGCAGCGTGTGTGAGAAAACCGTCCGCATGAACTTCGCTCTGATCTATGAGCTCCTGGACGAGATGGTGgaTTACGGCTACATCCAGACAACCTCCATGGACATCCTGAAGAACTTTATTCAGACTGAGCCGGTCGCCTCCAAACCCTTCAGTCTGTTCGACCTCAGCAACGTCGCTCTCttcGGGGCAGAGACGCAGCAGAGTAAAGTGGCTCCCAGCGCCGCCGCAGCCCGACCCATCATGTCGTCTCACAGTGGAGAGggaggtAAGAATGAGATCTTTGTGGATGTGGTGGAGAGACTCTCAGTGGTTATTGGCTCTAATGTGAgtgtgatgaaagcAGATGTGGAGGGAGAGATCAGAGTCAAGTGCTATCTTCCCTCATGTTCAGagATGAGGATCGGCCTGAACGAGGAGTTTAGCATTGGGAAGTCTCAGCTCAGAGgttacGGGGCAGCCGTGCGGGTGGACGAGTGCAGTTTTCACCAGGCCGTGAAGCTCGATGAGTTTGATACgtacaggattttaaaaatttgccCCAGCCAAGGAGAGCAAACCCTGATGCAGTACCAGCTGAGTGATGAGCTGCCATGTCCTCCTCCGTTCCGTCTCTTCCCCACGGTGGAAAAGGATTATGGGAGCAGGTTGTTGATTTTCCTCAAACTGCGCTGCGATTTGCCGCCTAAAAGCGCTGCTATAAATGTTTCAGTGACGGTTCCTGTGCCCAAGGGTTCTCTGAGtctctctcaggAGTTGAGTAGTCCTGACCAGACGGCCGAGCTTCGGCCCAAACACAAATCCGTGGTGTGGGAAATCCCACGATTCCCTGGAGGAGCTCAGCTCTCGGCTCTCTTTAAGGTGGAGGTTCCCTGTCTTAGCTCCGCCTCTCTCATGGAGGTGGGGCCTGTCAGCATGAGCTTCGAGCTTCCCAAACACACGTGTACAGGGCTGCAGCTCCGGTTCGTGCGTCTGTCTCCGAACCAGCAGGGTCCGGCTCATCGCTGGGTCCGCTACGTCACACACTCCGATTCCTACACCATACGCATCTgatgaacacactcacacacactcacacacacacacacacacacacacacacacacacacacacacctgacggtgtttcagtatttcagtaattTCCTGTATATTGAGTCCACAAAATTTACATTATCATGAGTGTTCATTAAAGTTACTCTGTGATGCTGagtatatatatgtagatatatctttttttaaaattaatattattattttgtattattttgctgtttgtgattttctttataaaCCATCATCATGCTTTGTAAAAGTGctgtataaattaaacaaatgattatAA

Function

symbol description
ap4m1 Predicted to be involved in Golgi to lysosome transport and protein targeting. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in Golgi apparatus; early endosome; and membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in cytoplasmic vesicle and trans-Golgi network. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 50. Orthologous to human AP4M1 (adaptor related protein complex 4 subunit mu 1).

NR:

description
AP-4 complex subunit mu-1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K12402 AP4M1; AP-4 complex subunit mu-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312326.1 True 2214 mRNA 0.45 15 1081869 1090531

Neighbor

gene id symbol gene type direction distance location
foxo1b LOC108277356 coding downstream 580 1052951 ~ 1081289 (-)
LOC113524167 thap12 coding downstream 75666 999241 ~ 1006203 (-)
si:dkey-250d21.1 LOC108276748,LOC108442106 coding downstream 85074 987090 ~ 996795 (-)
wnt11 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107751408,LOC107747044 coding downstream 121055 940503 ~ 960814 (-)
map6a map6 coding downstream 320798 745853 ~ 761071 (-)
trnat-agu_11 NA coding upstream 5070 1095601 ~ 1095674 (-)
trnas-gcu_6 NA coding upstream 7267 1097798 ~ 1097879 (-)
LOC113524202 NA coding upstream 7646 1098177 ~ 1098309 (-)
tmem88a tmem88,LOC108276534,LOC106608829,LOC106525123 coding upstream 38048 1128579 ~ 1134162 (-)
kdm6bb kdm6b,LOC108277160,LOC105902372 coding upstream 48348 1138879 ~ 1159183 (-)
G261676 NA non-coding downstream 27846 969913 ~ 1054023 (-)
G261686 NA non-coding downstream 83568 997641 ~ 998301 (-)
G261355 NA non-coding downstream 206092 657927 ~ 875777 (-)
LOC113524153 NA non-coding upstream 141832 1232363 ~ 1235521 (-)
G261748 NA non-coding upstream 232649 1323180 ~ 1323407 (-)
G261753 NA non-coding upstream 238040 1328571 ~ 1328776 (-)
G261758 NA non-coding upstream 244209 1334740 ~ 1334940 (-)
G261759 NA non-coding upstream 269608 1360139 ~ 1360361 (-)
LOC117599327 NA other downstream 49334 981406 ~ 1032535 (-)
si:ch211-266i6.3 LOC108276750 other downstream 67580 1006914 ~ 1014289 (-)
fhl1b fhl1b,LOC108444522,LOC107718794,LOC107701105,LOC107693928,LOC107548848 other downstream 765544 301010 ~ 316325 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other upstream 174921 1265452 ~ 1410939 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other upstream 685030 1775561 ~ 1780407 (-)
si:ch73-1a9.3 NA other upstream 1589144 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other upstream 1621911 2712442 ~ 2724473 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 1875124 2965655 ~ 2968182 (-)

Expression


Co-expression Network