LOC113524165 (LOC108277141)


Basic Information

Item Value
gene id LOC113524165
gene name LOC108277141
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1512564 ~ 1523146 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312431.1
CTGTCTCCTGACCCTCCCTTTCATTTTCTGCTAAAAGCAGCACTGAGAAACGAAATGAAAACGAAAGTGTGAGTTGCGTGAGAGAGCAGAACTTCCTCCTTCTGCGCGATAAACACAGTCAGTGCTGGACTTCAGGAGGGTGAACATGGAGGAATATCCTTATCCACTACTCGTGGAGGGAGATTGGTCAGCTATAAACGCTAAGACCCTCAACAGCAAagtcaacatttatttccagagCAAAAAGAAATCTCGGGGAGGAGACTGCGCAGTCAGATGGACCGAGGGGAGCTGCACAGTCTTCTTCAAATCAGAAGAAATCCGGGATCAAGTTCTGGCTAAGGCTGATCATGAAATACTCATCGAGAAGCAGGTGGTGAAGCTAAAGGTGTCCAACCCGGATTCAGGGagtcacacagaaaaaaaatcacaagaatCAgctaaaacaggaagtgatgtgtCAGCTGGAACTCTACAACCAGCTGCGAGGACAGTCTGCAGTGTACAGGTGGATAATGTACCTGCTGATGCCATCACCAACAAGCAACATCTGGAGCTGTACTTTGGGAAGTGGGGTGGATCTATAGAGAAAATCATCACAAATCCAGAGGAGAaaaccattattattacattctgCTCACAAGATGCTGCAAAGAGAATTTTGGAGAAGGCAGATCACGTTTTATCCGGTCAGCCAGTCACCGTGCGCCCATACCTTGGGCTTGATGTGAGTCAGACTGAAGCCGGTGAGCGTTTGGAAGAGTGGTCTAGTGCTGTGGTCCTGGAGAATGTGCCGGAAAACATTACCCAAGAGCACCTCACGCTTTTAGTGGACAGTATCGGCGGTCATTCTGAAGATGAATATTCCTTAGAGTTAATTCCAGAATCAAACACTGCTATTGTGACCTTTAATGACCCCAGGGCTGTAGAGAAGTTTCTTACAGAATGCAAGACTAAACGAAAGTTCCAGGATTATGGTCTCAAGGCCCGGCGTCTGGAGAAAAGTAGAAGTGTTAAGGTGGAAAACCTGCCTGCTCAGTGCGCTGAGGAATTTCTAGAACTTTACTTTGAAAAGCATGTAGGAGCAGTGGAAAGAATCAAGGCAATAGCAGATGAGCAAGCCGCTATTGTCACTTTTCATGATCAGCAGGCTGTCCAGAAACTCCTGGGAAAAGAACACTTTATTCGCAACACCCCGATTGATATATACCCATATTACCCTTCTTTGGGTTCCGCCTTGTATGGCAAAGACAGACCAACATGGACACTGCCAAAACCATTTACATATAAGATCCATCCTGCTATCAAAGTATTCCTCCAGAAGAAGGGACAAATCTCCTCCATCTGTAAAGAGATGAGCTCACACTTCTGCCAAGTGAACATGGACAAAGATGAAGTACTGTTCAGTCCTGTTCCTGCTTTGCTGAGACAAAAGTGTATAACCAAAAAGCACATAGACAGCTGGAAGCAAGACACCATAGATGGTTTCCAAAACATCCTCTCAAGCTTTGCTGTTTTTGAGTATGCGGTGATCCCTGCAGTATGGACTGCAGTAGAGAAAGACATCCGGTCAGTTGTAAAAGATAAAGCTGTCCTGGAGGTGGATTTGTCAACAGGATGGCTGAGTCTGGCAGGAATGGCTAAAGATATTAACTTATTGAAACCGATATTGGAGAACTTTTTAAAGGAAGCATCAAGTCAGATGGAAAGGGACATGAAAAAGACCTCTGAGGGCATTATGATGTCCCATGCCATATTCTTCTTACTTCAGCAGGTGGGACTGCAACACAGCGCTTCAGCCAAATACCCACAGCTGGAAATGACATACAAAAAAGACACCAATCAGTTAAGGTTAACTGGGCTTCCTTTGGAAGTTATTGACATCAAGAATTTGATCTTGGAGACACAATTGAGCTTGAAAGAGAAGATCCTGAAAATGGACCCTTCATTACTGGAGTTCTTGAGATCAGTGGACTCTGAGGAAATGTCAGGAGATCTTTTCACATCCAAGGGAATTAGTGCGGTCTACAGATTTGAAAATGGGAACATTGTTTTGACTGCAAATACAGACAAAGTGCTGACTGAGGCTGAGAAGAGGCTTGAAATGATGCTGACTTTACAGAGCCTTTCTGTAGAAGACCTAGATGTGCTTGAAAAGCCAGAATGGCAAGATCTCACTAATCAGCTATATGACACATACAACTTATCCAGGAAAAAAACTGTGCTCATAAAATCCTCAAAGAACAGGGACACAGTTGTAGTCTGTGGCTTTCAGGAACCGGTTAAAGAGGTTAGTAAGAGCTTGGAGCAATTTATTGATACACACTCAAGGATAGAAGAGACCATTCGTGTCAAGTCTTATGCTGTGGTGAAATTCATCAGAGAGAAGATGCCCCAGGTTTGGCAGAAATTTCTAAAGGGTGATGAACTGAAAATAGATTTTGACTCAAAAAGGCCATTGATTCGAGTGTCCGGAGAGCGTATTCATGTTCAGCCTGCGCTAATCTTTTCAAAAATCGCAAGAAATCTCCTCACTGACAGGTTTACAATTAAAAAGGCAGGAGCCAAAAAGTATTTCCAGGAACAGGGTAGCATGGTCTTGATGATGATAAAGCAACAAAGATTTGTGGTTGTGCTTGAGGATGCTTCTTTggaagaagaggatgaggagagTTACAGTGAGGAGAGTTATGATGAAGGTAGAGTGGAAGATTTTGGACAGCTTTCCTGTGAGGTTCAGACTCTTGGTGGGATTGTCATCAAAGTTATAAAGGCTGATATCTGCAAATTTAAAGTAGATGCTGTGGTCAATGCTGCCAACGAGGACTTGCAGCACATTGGTGGTTTAGCTTTAGCACTTCTGAATGCTGCAGGTCCATCTTTACAAAAAAGCAGTGATCAATATGTAGCTAAACATGGGAAACTTCTACCTGGGAATGCTATTATTACAGAAGCAGGCCTCCTGCCATGCAAATATGTAGTGCATGCTGTAGGTCCCCGATATTACAATACTGACAAGTTTACGGCTGTGAAGAAACTGAGACAAGCTGTGAGGGAAAGTCTGAACCAAGCTGTGTTTAAGAGGTGCTCCTCCATTGCAGTCCCTGCCATCAGCTCTGGGATATTCGGCTTTCCCCTTGACCTCTGCACTGAGACGATCGCTGAGGAACTGCATGCGTACACTGAAGACCAAAACCGCCAAGGTGGCATGAACACACTGAAAGAGATCCACTTGGTGGACAATAATCCCAAGACTGTCAATGCCATGGCTCAGGCTGTTAAAAAGGAGTTTGCAGAATTCAACCCCAGAATGACATTCCCAAAGCAAATGGGCCGTGGCCGTGGTCATCATGGTCATAATTATCGCGGTCGTGGTAACCGAGGTCAGGGATATCGTGGACAAGGTGCTGGTAGACATCGAGGCATTGGGGCAAGGGGTAATGATTCACAAGTGTACAGGGCAAAAGATCCTGAGGATTTTGAGCCTCAAAGACTGCCAGACTCAAACCCACATTTTAGAACCCAATTTGAGGACATGGAcaggtcagggtcagggtcagagTTTCTTGAAGCTCAATCCACAAAAGAAGGACTGAAAATCTTGCTAAGGAAAGGGAATATCCAGGATGCACGTTCTGATGTAATTGTCAACACCATCTCAGAAGACCTGGATCTCAGTAAAGGTGCCGTGTCCAAAGCACTACTCAGTGCTGCTGGTCCTCAACTCCAGGCTGAAGCTTATTCTCTGAATACACTTGGCAATTCCAGTCTTAATTATGGAGACATAGTGGCCACTAATGGCTATAACTTAAATTGTAAAAGGGTCTTCCATACTGTTTGTCCATTTTGGAATGGAGGGGGTAGATCAGAAGATGAGaTTCTCAAAAGCATCATTCAAAACTGCCTGAAAAGAGCTGAGAACCAGAAAATGGCTTCAATTTCTTTTCCAGCCATCGGCACAGGGAATCTAAGCTTTCCCAGAGATCTTGTCTCCAGAATTTTGCTAAGTGAGATTCATGCCTTTTGTGTCAGAGTTTCTCCTCAGTACCTTAAAGAGGTGACTGTGATTGTGCATCcatcagacagagagactgtCCAGtgCTTTGTAAAAAGCTTCAGAGGTGAATGGCAGGGTACCACCATGAAAGGAGCACATGCTTTTCAGCAATCACCAGCTAAAAAACCACCTCCAGTTAGATCACCCCAGTCTGCTGCAGGTTTCTTTGGAGCGGTTTCTACTCCTAGCCTTGGAGTGCACAAAATGCGGATAGGGCCTCTGACCCTGGAGGTGTCATCAGGTGACATCACGAAAGAGAGATGTGATGCAATCATTAATTCCTCCAATCAGTCATTCTCTCTGAAATCAGGAGTTTCCAAGGCCATTTTAGACGCTGCTGGGTTAGCAGTGGAAAGGGAATGTGCACAGCGTGtggcaTCACAATCTCCTCAAGCAGAGACAATCGTGACTTCAGGAGGACAACTGCCATGCAGCAACATTATTCACATTATAGGTCGAAACAATCCTGCACATATCAAGGATGCTGTTTACTCTGTATTAAAGCTCTGCGAAGTCCACAAGTTCTCCTCTGTTGCCTTTCCAGCACTTGGCACAGGTCAAGGTGGGGTCCATCCTGCTGCAGTTGCAGATGCCATGATTGAAGCCGTGATTGACtttgtgaagaagaagaaaagtatgAATTTGCAAAGTGTAAAGTTCTTGATATTCCAGACGTCCATGGTGTCTGATTTCCATCAGAGCATGCTGAAGAGGCAGCAAGAAAGTGTGGACGAGGGTGGTGTAATGAGCTGGATAAAAGATAAATTTGATGCCGTGACCAACTTCTTCACTGGTACTGGCTATGTAGAAGCATCTGCAAATGAAGAATTCACTTTGGTGGGCGAGGAGTTCGAGCCTGTTGTGTTTCAGCTGTGTGGAGAGCGTGAGGAAGACCTGAGCGAGGCGAAAAACCTGATCACCAGCTTCATTGTGAGGGAGCACATAAGCTCAAAAATCGAGGACTCAGCCATCAGCTGTTTCAGCCAGGAGGAGGCTGACGTGCTGAGCAAACTGCAGAGGGAGCTCACAGTCAGCATCCACCTCTCAAAGAGTGGCCCTGAGCCGGCGTTCACCGTGGAGGGCCTGACACGAGACGTAGTAAAGGCTGAGAACCAAATCCGTGACATGATACGTAAAGTGGAGAAGAACCAGACACGCCAACGTGAGGCCTTTGCGCTCAGCAGCCAAGTAGAGTGGCAGTATCAGGACCGCAGTAACAAATTTGTTCCTTTTGATATTTTGACTAATTATGACCTGGAGCAGGCTTATAGATTAAAACAGTCTCGTTTAATGATCAACATTAATAATGAGCCGTATGAGGCCAATATAGCCTATGCGATGGCTATGGGAAAATATGGACAGATTGAATTGAAGAGGACTGATCTGAAACagcaaacctctgtctctctgcccaGTCACTGGAAGGACATGAAGGGAAAGTTCGTTTTGCGGGTTGAAATTCAACAAGGCAGTCAGGAATATGTTGATGTGGAGACGAAGTTCAGGAAAACAGGACTGACATCAAATATCCTCAAAATTGAAAGAGTTCAGAATGAGACTCTTTGGAAGAACTACATGAACCAGAAGGCGTACctggaaagaaagaacaagCACACAAACAATGAAAAGTTGCTTTTCCATGGCACTGGCCCTGATAATATTGATAAGATCAACGATCGAGGTTTCAATCGCAGCTATGCTGGGATGCATGGGACCATGTATGGGAATGGTGTGTATTTTGCTGTTGACCCAAGCTACTCTGCCCAAGGCTACGCCAAGCCTGATCAGCAAGGTCACAAGCGCATGTATTTGGCTCGAGTGTTGGTTGGTGACTTCACCACGGGGAAATCTGGACTTCTTGCTCCTCCAGCCAAAAACTCCACCAGCATGGAGCTGTATGACAGCGTCACTGATAACCAACAATCTATGTTTGTGATATTTCATGATGTTCAGGCCTATCCTGAATACCTAATCACTTTCCAGTAGAAGCTAGGTTTACACTGATGTTATCTCATTTCTTTATGACCTGTTCGTTTCCTGCAGTTTTTCCACTGTGGGACTCAAAAAAGTTGCCatatagaaaatatacaaaataccTATAATGTAGGATTTGGAAAATGAAGCTCTTGATTCTGTTGAatactttgcatttttttaaaaatatggaaCACTTCTGTAATATAATGTgatcacatatttacaattttcttAATGTGGAAGCATAATAAAGAATGTCTGCTGCTTTAATGTTCATTATGCTGCTTAGTTACACTTTATCGATGACTATTTACAAATATAAGTAGATGCTTAAGTAAGGGAGCAGATAGAGCCAGACAGTAAGAGGTTGAGGTTCTGTCACTGAGTGGTCACGTTGATTATGTGTGAAATTGTTTGTTAAAAATGGTGTGACTGTTGGGATCAGTCCATTTTACAGAATATATCTAGACACGTCTTAACACCTACTTTCTCTATATAAGACCAGCAAGACCCAAATAAACACTTACAACACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312431.1 True 6568 mRNA 0.44 20 1512564 1523146

Neighbor

gene id symbol gene type direction distance location
tlx3b LOC108276618 coding upstream 51340 1450158 ~ 1461224 (+)
LOC113524161 NA coding upstream 89099 1420371 ~ 1423465 (+)
cldn7b cldn7b,LOC108277307,LOC108444573 coding upstream 103730 1401549 ~ 1408834 (+)
fgf11b fgf11b,LOC103026543,LOC108443340,LOC107677987,LOC103363034 coding upstream 125164 1360710 ~ 1387400 (+)
pcolcea LOC108277346 coding upstream 384312 1119530 ~ 1128252 (+)
LOC113524200 NA coding downstream 29122 1552268 ~ 1553689 (+)
fgf18b LOC108276546,LOC108437818,LOC103034963,LOC107742373,LOC107687415,LOC107552074 coding downstream 289453 1812599 ~ 1826322 (+)
avd LOC108277130 coding downstream 347513 1870659 ~ 1873142 (+)
pcdh1a LOC108276538,LOC108437809,LOC107678039,LOC107708655,LOC107720713,LOC107564544 coding downstream 459007 1982153 ~ 2053236 (+)
LOC117599403 NA coding downstream 820515 2343661 ~ 2347385 (+)
LOC113524197 npm1a,LOC108277343,LOC108444574,LOC107676031 non-coding upstream 2477 1428150 ~ 1510087 (+)
G261585 NA non-coding upstream 178578 1333782 ~ 1333986 (+)
G261544 NA non-coding upstream 248424 1263307 ~ 1264140 (+)
G261534 NA non-coding upstream 263883 1241824 ~ 1248681 (+)
G261536 NA non-coding upstream 265953 1245800 ~ 1246611 (+)
G261634 LOC108276785 non-coding downstream 73616 1596762 ~ 1610711 (+)
G261638 LOC108276785 non-coding downstream 77325 1600471 ~ 1615601 (+)
G261642 LOC108276791,LOC108276664,LOC108276785,LOC108276794,LOC108276798,LOC108437803 non-coding downstream 104540 1627686 ~ 1678077 (+)
G261644 LOC108276798,LOC108276785,LOC108276794,LOC108276793,LOC108437803,LOC108416544 non-coding downstream 111465 1634611 ~ 1644162 (+)
G261643 LOC108276792,LOC108276799,LOC108276796,LOC108437803,LOC107688304,LOC105905981 non-coding downstream 159073 1682219 ~ 1704174 (+)
ponzr2 LOC108277330 other upstream 93075 1411986 ~ 1419489 (+)
G261503 NA other upstream 275432 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 400286 1101789 ~ 1112278 (+)
G261178 NA other upstream 784839 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 856355 603726 ~ 656209 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 1221250 2744396 ~ 2747317 (+)
pcp4a NA other downstream 1272345 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 1593023 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 1730170 3253316 ~ 3576137 (+)
triap1 triap1,LOC106568193 other downstream 3554707 5077853 ~ 5080643 (+)

Expression


Co-expression Network