smc5 (smc5,LOC107726549,LOC107734934)


Basic Information

Item Value
gene id smc5
gene name smc5,LOC107726549,LOC107734934
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24658808 ~ 24697852 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312446.1
AAAACTGTCAGATTTACCTCAGAGCAGCGCGTGCCCCAGCGGCCGCCCTGAATGACGTAGGGCGCTTGTTAAGTCACGTGGGGCATGAGGACCAATCAGAGGCGGACGTGTCTGCAGGCACCGGCGGGAAACGAAAGCAGTAAACACAGCGCGAGACGGATTCTCACTCAGGCACCGTCATGGCGCTACCGGGGAAAAGAAAACGAATAAGTCATATTTTAACCAACTCACAGACCTCGAGCAGTCAGTCCACTTTACCCTGCGCTCCGCACACGGAGCTGGGAGATGAGCGGGGACATGAGCCGGGACAGCGCTTCGTGGAAGGATCTATTGTCCGCATTACTATGCAAAACTTCCTCACGTACGATCACTCAGAAGTGTTTCCTGGTCCGAACCTGAACATGATTGTGGGAGCGAACGGAACCGGCAAGTCCAGTATCGTGTGTGCGATCTGTCTGGGCCTGGCGGGGAAAACGGCCGTGCTGGGCCGCGGGGACAAGgtgggaCTGTACGTGAAGAGAGGATGCACTAAAGGCTCAGTGGAAGTGGAGCTGTACAGAGCTGCTGGAAACCTGGTGATTAGTCGTGAGATAACCGTGGAGAATAACCAGAGTGTGTGGATGATTAACGGTAAACACACGAGTCAGAAGGTGGTGGAGGAGGCAGTGAAGGAGCTCCACATTCAGGTTGGGAATCTGTGTCAGTTCCTGCCTCAGGAGAAGGTGGGCGAGTTCGCTAAGATGAGTAAGATCGAGCTCCTGGAGGCCACGGAGAAATCCGTCGGTCCGCCAGAAATGTACAACTTCCACTGTGAGCTGAAGAACTGCCGCAGTAAAGAGAGGGATCTGGAGAACCTGTGTAAGGAAAAGGCCAACTTCCTGGAGAAAGCCCGGCAGAGGAACGAGCGCAACAAGGGGGACGTGGAGCGCTACCACAAGAGGAGGAGACATCTCGACAGGATCCAGATGCTGGAGAAGAAGAGGCCCTGGGTGgagtacGAGACGACTCGTAAGGAGCTGGAGGAAGTaaagaagcagagagaggaCATGAAGAGGACGGTGAAGTCTCTGAAGGAAGCTCAGACGCCCCTGCTGAGAAAAATCCAGTTAATCGAGAGCCAGCTGCAGCCCATCGAGAACCAGATGAAGGACAAGACCGCCAAAATCAGAGAGGCGTCACAGAAGTGTAAACACAAACAGGACCAGCTGGACTGGAAGTATAAAGAGATTGATGACATTAAGCAGAGTCTGAGTCTGAAGCGGACCGAGGAGGCGGATCGGCAGAAGCGGATCGGGATCACGCGCCGTATGATTCAGGACCTGCAGACGGAGCTGGACAGCATGGGCAGCCAGGAGGACGTCACGCCCAAGATCGAGGGGGTAAACTCTGAGCTCAGGAGCATCCAGGAGGAGAAGTCCAGGCTGGAAGGAGAACGTCAGGACCTGAGGAGGGATAAAGACGAGGCCACGGGCGAGCTGAGGCGTCTGCAGAATCGTCTGCGCAGTCTGGAGGACATGATGAACAGGAAGGAGGAGAAGCTGCGCAGTCGCTTCCGTGACACGCACACGGCTCTGCTGTGGCTGAGGAGGAACCGCCATCTCTTCGAGGGAAACGTGTACGAGCCCATGATGATGGTGATTAACGTACGGGACCCGCGCTATGCGAAGTACGTGGAGAGCCACGTTCCTATAAACGACCTGAGAGCGTTTGTGTTCCAGAAGCAGCAGGACATGGAGACGTTCATGGCAGAGATacgagacagacagagactcCGAGTGAACAGCGTTATTGCTCCTGCGGAGTCGTGTGCGAACCGACCGCCGTCGCGACCCATCGACTCCCTCAAgcgTTATGGGTTCTTCTCCTACCTGCGAGAGCTGTTCGATGCCCCAGACGAGGTGATGAGTTACCTGTGCTATCAGTACAAAGTTAATGACGTACCTGTGGGGACGGAGAAGACTAAGAACATGATCGAGATGGTGATAAAGGAGTCTCAGCTGAGGATGATCTACACTGCAGAGGAGAAGTACACGGTGAAGAAGTCCACCTACTCCAACAAGACCATCTCCAGTAACTCCGCCCTGCGGCCCCCTCAGTTCCTCAGCATGACCATCGACACAGATGAGAGACGGAAGCTAGAGGATCAGCTCAGCGCAGCTCAGCAGCAGGTCCTGGCGGTGGCCTTCCCGCACAGGCTAATCAGGAGCAGCAGGTCAGACTGGATCGCCGTGACAACGAGCTCCGAGCTGAAAAAGCAGGTGGCCATAGTGGAGGAGTTCCTGCACTCCATGAAGcacagAGCCAGGCTGAGCATGGAGAAGGTGTACTTGGCTCTGGACACAGCAGGACTCAGTGCTGAGAAGACCAAACTGGAGTCTGACTGCAGGGAAGGGTCAGCTGAGCTCAGGAGGGcggagcaAGTGTTCACTGAGCTGGACCAGAGGAAGGCGAGTCTGTTGGAGACGTGTAAGAGGCTGATGAGGAGAGCCAGCGAGATCTGTAACATGAACCCCGGAGAGACTGTAGTACCAGAGATACTGCACacgGCGTTTAGCGAGCTGCCCAACACTCTGGATGAGATCGACGCCATGCTGGATGAAGAGAAGGCCAGAGCAGAAGGGTTCGCTGACCTCAGTGAAAGaGTGGTGGAGGAATATAaccagagagagaaggagataaaGGAGATGGAGAAGGAGCTGGAGGAGAAGACCAAAGATCTGAACACCTACAGACAGAACATCTCTGAGgcgAAGGAGCGCTGGCTGATTCCCCTGAAGCAGTTGGTGGATCAGATTAATGAGAAGTTCAGTGATTTCTTTCGCTCCATGAACTGTGCTGGAGAAGTCGACCTGCACTCTGAGAATGAggaGGAGTATGATAAATACGGGATCCGTATCCGGGTGAAGTTCCGCAGCAGCACTCAGCTGCACGAGCTCACTCCTCACCATCAGAGCGGCGGAGAGCGCAGCGTCTCCACCATGCTGTACCTCATGGCCCTGCAGGAGCTCAACCGCTGCCCCTTCAGAGTCGTCGACGAGATCAACCAGGGGATGGACCCGGCCAATGAGAGGAGAGTGTTCGACATCGTGGTGAAAACTGCATGCAGTGGCAAAACCTCACAGTATTTCTTCATCACACCAAAGctcctTCAGAATTTGAAATACGCAGATGAGATGACGGTTCTTTGTGTCCACAACGGCCCCCACATGCTTCCACCTCACAAATGGAACGAGAAGGCCTTCATCAGACGCGTTAAACGGAGCAACCAGTAACGCCATCagtctgtttcacacacactcacacacacacacacacacaccctgagcaAGTgaactctccacacacacacacctgctcactgacgcctatttatatatttccattGTCCATGTGGACTTTTGttcatttgtacatttgtgtatttttgaggaattgtttaaaaagaataaagttAATATTTGACATTA

Function

symbol description
smc5 Predicted to enable ATP binding activity. Predicted to act upstream of or within double-strand break repair via homologous recombination and sister chromatid cohesion. Predicted to be located in chromosome and nucleus. Predicted to be part of Smc5-Smc6 complex. Orthologous to human SMC5 (structural maintenance of chromosomes 5).

NR:

description
structural maintenance of chromosomes protein 5

GO: NA

KEGG:

id description
K22803 SMC5; structural maintenance of chromosomes protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312446.1 True 3467 mRNA 0.54 24 24658808 24697852

Neighbor

gene id symbol gene type direction distance location
sgtb sgtb,LOC107558703,LOC107667268,LOC107548671,LOC107705058 coding downstream 149248 24500862 ~ 24509560 (-)
trim23 trim23,LOC107658681 coding downstream 181732 24465097 ~ 24477076 (-)
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding downstream 203853 24378185 ~ 24454955 (-)
srek1ip1 NA coding downstream 348983 24306452 ~ 24309825 (-)
lin54 lin54,LOC107744261 coding downstream 384555 24259708 ~ 24274253 (-)
mamdc2b LOC108277069 coding upstream 939 24698791 ~ 24718235 (-)
tjp2a NA coding upstream 35696 24733548 ~ 24749451 (-)
pip5k1ba pip5k1b,LOC108428883,LOC107726562,LOC107705047,LOC107667273 coding upstream 63364 24761216 ~ 24777827 (-)
actr1 actr1,acty,LOC106585571,LOC105889177,LOC106563059,LOC107602067 coding upstream 95702 24793554 ~ 24797730 (-)
zgc:86599 zgc:86599,LOC108276884,LOC107718706,LOC107558099,LOC107758606,LOC107602047,LOC107689940 coding upstream 108570 24806422 ~ 24808492 (-)
G274781 nln non-coding downstream 7135 24513288 ~ 24651673 (-)
G274833 NA non-coding downstream 21378 24636900 ~ 24637430 (-)
G274810 NA non-coding downstream 41104 24564642 ~ 24617704 (-)
G274819 NA non-coding downstream 66848 24591240 ~ 24591960 (-)
G274804 NA non-coding downstream 111656 24546200 ~ 24547152 (-)
G274841 NA non-coding upstream 21079 24718931 ~ 24719131 (-)
G274856 NA non-coding upstream 51793 24749645 ~ 24749854 (-)
G274857 NA non-coding upstream 57328 24755180 ~ 24755382 (-)
G274858 NA non-coding upstream 82267 24780119 ~ 24780386 (-)
G274859 NA non-coding upstream 83109 24780961 ~ 24781675 (-)
LOC113544170 plac8 other downstream 357776 24297476 ~ 24301032 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other downstream 405496 24251548 ~ 24253312 (-)
nrarpa nrarp,nrarpa other downstream 795540 23859305 ~ 23863268 (-)
G274342 slc27a4 other downstream 856524 23798359 ~ 23802284 (-)
LOC113544130 rusc2 other downstream 3451638 21189969 ~ 21207170 (-)

Expression


Co-expression Network