LOC117595648


Basic Information

Item Value
gene id LOC117595648
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 8200080 ~ 8217268 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312463.1
CCCAAGTGTAAACTGGCTCATTTTATAGGTATGTCCGAGTATACCAAATCTTGCAGTCTAAGTTTTGGTGAAGGTATTCTAGATTACATTGTAGAGCTCAGGAGACTTGCAAGAGACTGTAATTATGGGGACTTTTTATCTCAAATGTTGAGGGAACATCTTGTGCGTGGAGTCAATGATGACCAAATTCAGTGTTGGTTACTTTCGGAGGCTGACTTAACCCTCTGGGGTCGACCAACGCGCTGGCGCGTTTTGTGGCATCTTCTCCTGATAACGCCGAAAAGAACTTAAATTACTCTGTCAGTTTTGATCGTACAGATAAGAGCAATACATCATTCGAATCTGTAAAGGgtctacttttatttgtatacactcataataacaacaaaatgctGTGCTTTTGtagaataaagaaaacagacaggGTGCGTTCTCTGTCTTCTCCGTCTCTGTCACCTCTCTTCACAGACCCGTAAATAAAACACCCTGAATCTCAGCGAATACTTGCCTCAAAGACATGAGAAATATATGTATAGAAAGCTTGAGttgtctacttttaaattaaacaattcaAGTCGAAAACAAATAATCTCTTTTTATGTAATCCGTATGAAAGTAAGGAGTGGTACAGTTTCTCCTGTCTCACCTCATTATCGCTAATGTGATCCCGCCTCGCAGTGAGCACGCTGTTCATATGTAAACGATCTGAGGTGAGCCAGGTAATTATGTACACGCCCCCGAGAAATGGCATAAAACGGCAAGCTTCATCACAGAATTTACTCACTTTTTTCTGCGCGTTTGGATGATGGCACGCTACACGGGTGAAGAAGCACTACGGCTGGTTCTGGACAGCGACGAAGAGATTACTTTCTCCTCAGAGGAAGAGCGCGACTCGGATGACGAGCGTTTGCATTTTGAAGAGCGAGTGGACCCAGCGAAGGATATCAGTCCTGACGAGACTGTGAATACACCACTCTCGCCTTCACCTGCATCTCACACAGGAAGTGGACGCAGacgtgagaaaaacagtgaaaaagaaCCTGTGGCAAAGAGAGCCAAAGCAGATAAGCAGCCCACTCTGTCATGGAACACAGAGACTGATGTTGACATGGCTCCACAGGCTCTGAGATTCCTGCCCACACGGCAACCTGGACCACAGCTAGACCCAAGACCCTGTGAAGCACACACTCCCATGAGTctcttcaaaatgtttttttcttcaactgcTGTGTCAACTCTGTGTCGAAACACCAATGCTCAGGCTGCCAGGGCACGTGCAAAgggccataaatataaatggacaGACGTCAGCATCAGTGAGCTGTACTGTTACATTGGGCTACTCTTCTACATGGCCATGGTGAAGTTGAGGTCCATCAGAGACTACTGGCGGCAGGATAGTGTTTTCTCTGTTCCTTTTCCTGCCACAATCATGTCAAGGGACAGATACCGCACCATTTCATGGAATCTGCACATGAGTCACCCAGATGCAGACAAGGACAATGACCGAAAGAGAGGCACAGCTGTACACGACCGTCTTTTCAGGATCAGACCCCTCATGGACACTATCCGGCATGCATGTAAGGCCATCTATCATCCAAGACAAAATTTGGCAGTGGATGAAAGAATGGTGGCATGCAAAGCAAACACAGGAATGACTCAGTACATGAAAGCCAAACCAACCAGGTGGGGCTTCAAGTTGTTTGTTCTTGTGGACTCATCAAatggatatactgtagattttgcTGTGTACACAGGAAAGAACAACTTTCCCACAGGCCATGGACTGTCATATGATGCTGTGACATCTCTGTTGGACCGTAGAGTTTTGGGCTCTGGGTACCATGTATACATGGATAATTTTTACACTAGTCCCAAGCTTCTAACAGACTTGTTTGCTTTGAAGTTTGGTGCATGTGGGACTTACAGAGACAACAGGAAGGATTGCCCTCGGAAAGCAGCTAACTCACTCACCAAAAAAATCTGCGAGGGGCTCCATCAGGTGGATTCGAGATGGACATCTTGTGTTTGTGAAATGGATGGACACACGAGAGGTGTCTGTCTGTTCCACCATCCATGCTGCTCATACAGGAGACACTGAGCAGAGGAGGGTGAAAACACAAAGGAAAATAGATACAGAAAAATGACTTGCAATAGCCTGCGGaaaaaaggaatgaataaaGAGCTAGAAAATTCAACCATTAAGCTCAAAGCATACACTGAAGAGGGACTAAATGTGCAAGGGATGACCTGGATCGTAGTGCAGCATGGATGCATAACAAAGACATTACTGATAATGTGGTGGCAGGAACAGTGCCAACCTTAAATGGCTAAGGGTGGCTGCAGTGGCTGGCCATACAAATCCATGCTGTGCACAATGTAAATCAACCACACCCCAGATCTCCCTGGAAAAGGTGTTAAAGAGGCAAAGTGAAGTCTTCAAAGATGAGCTGGGGCAGCTTAAAGGTACTACAGCCAAAATCTATGTAGCTAAGGATGCCCAGCCTAGGTAACAATGAGGAATATCTGTGGAACCTGGAGGAAGTGTTTTGCAGGCTGGAGGAAAGGGAACCCCAGCTAAAACATAACCTGTCAAGCCTGCTGGCCCCACTACATAAGGTCCTGTGACAGGAGGTTAAGTGGAGTTGGGGTGCAGAGAAGCAGAAATCCTTCAAGCAGTCCAAACTCATGAAGTCATTTCAAGTCCTAGACATGCAGTCATCTCGGGTCCCGGACCGAGACATGGTGCTGTTCAGACCACTTGAATACATACAGTGGGGATGGCCAAAACACCTACATGATCCAGCTTTTGCTACaaatgtgagcagaaaagagGAGCAGCATGCTGAACAGTCTGCTGTGGAGTGCTAGGGTCGTCAACCCAAAGCCAGGGACAGCTGCAGTGCCTCAGCAGTTACATCAAATATACCTTTatcaacacaaaaatgaaagcCCTTGCAAGAATCTACTGCTGGTGGCCAAAAATGGATATGGAAATTGAGGCACTGaTGGAGATGCCATTACACTAATGGAGGCTACCTTCAAGGTTGCTCTTTTCATCAAACCACAGCTGTCTTGCAGAACATGTGCAGAATGGCAAAACTGCCTGACCCAGAAGTGGAtagaggaggatgaaggaagGCTCCACATGAGGAATGAACTTATTCAAagatttttttgcaaattataAACAGGTGTAGAATGCCCCCAAATAATAAATGGCATGAAATAACttgtttaatttatacattttattcagttaaatgAACATTACAGAGTTGAATAATAATGTCATGAAAGCACTTGTTGaatgatatattttatttagttaaataGACATTgcaatgctagctagctaatcaactctac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312463.1 True 3369 mRNA 0.45 5 8200080 8217268

Neighbor

gene id symbol gene type direction distance location
cetn3 cetn3,LOC107589032,LOC107602084,LOC107758597,LOC107658563,LOC107689496 coding upstream 255952 7937228 ~ 7944128 (+)
scarb1 scarb1 coding upstream 289825 7890041 ~ 7910255 (+)
ubc ubb,ubc,LOC107553588,LOC100190459,LOC100194618,LOC105015226,LOC107658630 coding upstream 335937 7860866 ~ 7864143 (+)
tpst2 tpst2,ubc coding upstream 341255 7855327 ~ 7858825 (+)
LOC113544706 sez6l,LOC108276519,LOC107741658,LOC107758626 coding upstream 344139 7785678 ~ 7855941 (+)
LOC113544932 NA coding downstream 57779 8275047 ~ 8276323 (+)
rnft1 rnft1 coding downstream 498161 8715429 ~ 8731985 (+)
si:ch211-244c8.4 LOC108277057 coding downstream 855161 9072429 ~ 9076274 (+)
zdhhc20a zdhhc20a,LOC108276908,LOC107743391,LOC108411113,LOC107697429,LOC107589301 coding downstream 917892 9135160 ~ 9151699 (+)
smyd4 smyd4 coding downstream 999512 9216780 ~ 9252133 (+)
G265544 NA non-coding upstream 10281 8189180 ~ 8189799 (+)
G265520 NA non-coding upstream 102507 8095403 ~ 8097573 (+)
G265490 hapln1,LOC108261073,LOC108425247 non-coding upstream 213984 7982659 ~ 7986096 (+)
LOC117599395 NA non-coding upstream 222657 7975659 ~ 7977423 (+)
G265420 NA non-coding upstream 347815 7851915 ~ 7852265 (+)
G265564 NA non-coding downstream 42823 8260091 ~ 8260403 (+)
G265565 NA non-coding downstream 43248 8260516 ~ 8260754 (+)
G265622 NA non-coding downstream 82556 8299824 ~ 8302919 (+)
G265635 NA non-coding downstream 123242 8340510 ~ 8342287 (+)
G265638 NA non-coding downstream 157283 8374551 ~ 8374809 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other upstream 12469 8175514 ~ 8187611 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other upstream 1073834 7116051 ~ 7126246 (+)
G264948 NA other upstream 1117639 7066871 ~ 7082441 (+)
LOC113544903 mphosph9 other upstream 2005399 6169893 ~ 6194681 (+)
G264336 NA other upstream 2188178 6008800 ~ 6011902 (+)
LOC113544929 NA other downstream 112437 8329705 ~ 8353841 (+)
G265696 NA other downstream 416367 8633635 ~ 8639728 (+)
G265807 LOC107756568 other downstream 451546 8668814 ~ 8669797 (+)
LOC113534874 LOC108276751 other downstream 1039675 9256943 ~ 9264111 (+)
G266161 NA other downstream 1118533 9335801 ~ 9336290 (+)

Expression


Co-expression Network