fgf11b (fgf11b,LOC103026543,LOC108443340,LOC107677987,LOC103363034)


Basic Information

Item Value
gene id fgf11b
gene name fgf11b,LOC103026543,LOC108443340,LOC107677987,LOC103363034
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1360710 ~ 1387400 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312493.1
CCCCTGAACCCTCGAGGGGCTCCGAACCTCCAGTGAGCACTTTCCCCTGCTTCAGGACCAGGAGTGAGCGAGTGACCGAGCGCAGAACCTCAGGCAGAACCTCAGTCCAACCCCCCTCCCACAGTTGAGAGGGGGGGGAAGATGGCAGCTCTCGCCAGCTCTCTGATCAGACAAAAACGGGCGGTGAAGGAAGACCAGGCCAACCGACCAATCGCCAACAAGCGCAGGCCGTGCCCCAAGAGCAACAAGTCGCTTTGCCAGAAACAGATCCTCGTTCTCATCTCTAAAGTGCGACTATGTGGAGGACGAAGAGGGAGAACCGACAAAAGACCAGagcCTCAGCTAAAAGGGATTGTCACACGCCTGTACAGTCAGCACGGCTTTTACCTCCAGATGCAGCCAGATGGAACCATGGACGGCACAAGGGACGAGAGCAGCTCcttctctcagTTCAACTTGATTCCTGTGGGTCTGAGGATCGTGGCCATTCAGGGGGCGAAGACGGGGCTGTACCTGGGCATGAACAGCGACGGCTACCTCTACACCTCCgaGCACTTCAACTCAGAGTGTAAGTTTAAAGAGAGTGTGTTCGAGAACTACTATGTGACGTACTCGTCCATGCTGTACCGTCAGAGCCAGTCGGGTCGCTCGTGGTACATCGGCATCAACCGCGACGGCCAGGTCATGAAGGGCAACCGGGTGAAGAAGACCAAAGGCGCCGCCCACTTCCTTCCCAAGGTCATCGAAGTTGCCATGTATAAGGAACCTTCGCTGCACGAGCTCGAGTCCGAGCAGAGCCCGCCTCGAAAGACAGCCAAGACGTCGGACTCGCTGCAGAACGAACGCAACGGGGCGCAAAGATCCGACGCCTCCTTATAACACAGGGAGgtcagagggagagggaggtgGAACTCAAAGAACTCCAACACCTCCAggaactccatttcccatcatgcaccaTGGCAGGAAGTTCTCAGATTCTGGGAGGTGTCATGGTGGGACCTGAGAGAGGAGAACCCCACGTCTTCCTTCCTTCTGATTCAGCATGAGCTTCCTCAGCCCCGTcatcacactcttacactccaATATCCCAGCATGCAACAGTCCTGCGGAACAAGATGGCCGCCATCTACACACTCCGACATAATGAGTCATCTTCCTTTCCCGCTTCCGCAATACTGCAGCCTGATTTGTTGCTTATTTTTACGTTTGTGGTTCatgtattcatattttgttAGTGCTGAacattaagtgtgtgtttgagagagaaggagagagagagatcagtaaATGATTAGCGTCCAGTGATTAGCATTAGCCTTAGCATCCACCAGCACAAGGAGGCTCTATCTGCTAAACAGCGTCTTtgacagaaaacaacaaaataaaaaggatTTCGCAACGAAAGTTAGcatttttaacatcacaaaCCCAACAGCTagtgtttctaaaaaaaaatcgaacGTTTTTGTACTCGCTTCACATCATCATAACAATCCTCGATACCAAATAACGAGTATGAAGACTGGTGACTTTATATTGAGAACTAATTAATCCGGAGACCAGACACTTTTCCGTTTTTCATTTAGTTACCACGTAGTAGAATTTGATTCGGAGAGAAAAACTGGATAAACAGGTGATACATTCggtagttttttaaaataattttttacaatCGATCTTTCACCAGCTAGCTGAGTTTTATTAACTTCTAAATTACGTTGTAGCTTATAACGgttttttcatttacaaaaaaggTTCATTGAGAGCAAATATTTCCACATTTGCAACAAAATATCa

Function

symbol description
fgf11b Predicted to enable sodium channel regulator activity. Predicted to be involved in regulation of voltage-gated sodium channel activity. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and nucleus. Orthologous to human FGF11 (fibroblast growth factor 11).

NR:

description
PREDICTED: fibroblast growth factor 11-like isoform X2

GO: NA

KEGG:

id description
K22413 FGF11_12_13, FHF3_1_2; fibroblast growth factor 11/12/13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312493.1 True 1800 mRNA 0.49 5 1360710 1387400

Neighbor

gene id symbol gene type direction distance location
pcolcea LOC108277346 coding upstream 232458 1119530 ~ 1128252 (+)
trnal-aag_10 NA coding upstream 261257 1099372 ~ 1099453 (+)
trnal-uag_7 NA coding upstream 265778 1094851 ~ 1094932 (+)
and3 LOC108277318 coding upstream 266377 1092079 ~ 1094333 (+)
uvrag uvrag,LOC108411119,LOC102207598 coding upstream 494846 796839 ~ 865864 (+)
cldn7b cldn7b,LOC108277307,LOC108444573 coding downstream 14149 1401549 ~ 1408834 (+)
LOC113524161 NA coding downstream 32971 1420371 ~ 1423465 (+)
tlx3b LOC108276618 coding downstream 62758 1450158 ~ 1461224 (+)
LOC113524165 LOC108277141 coding downstream 125164 1512564 ~ 1523146 (+)
LOC113524200 NA coding downstream 164868 1552268 ~ 1553689 (+)
G261585 NA non-coding upstream 26724 1333782 ~ 1333986 (+)
G261544 NA non-coding upstream 96570 1263307 ~ 1264140 (+)
G261534 NA non-coding upstream 112029 1241824 ~ 1248681 (+)
G261536 NA non-coding upstream 114099 1245800 ~ 1246611 (+)
G261510 NA non-coding upstream 146214 1203000 ~ 1214496 (+)
LOC113524197 npm1a,LOC108277343,LOC108444574,LOC107676031 non-coding downstream 40750 1428150 ~ 1510087 (+)
G261634 LOC108276785 non-coding downstream 209362 1596762 ~ 1610711 (+)
G261638 LOC108276785 non-coding downstream 213071 1600471 ~ 1615601 (+)
G261642 LOC108276791,LOC108276664,LOC108276785,LOC108276794,LOC108276798,LOC108437803 non-coding downstream 240286 1627686 ~ 1678077 (+)
G261644 LOC108276798,LOC108276785,LOC108276794,LOC108276793,LOC108437803,LOC108416544 non-coding downstream 247211 1634611 ~ 1644162 (+)
G261503 NA other upstream 123578 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 248432 1101789 ~ 1112278 (+)
G261178 NA other upstream 632985 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 704501 603726 ~ 656209 (+)
bcl7ba bcl7b other upstream 791527 507279 ~ 569183 (+)
ponzr2 LOC108277330 other downstream 24586 1411986 ~ 1419489 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 1356996 2744396 ~ 2747317 (+)
pcp4a NA other downstream 1408091 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 1728769 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 1865916 3253316 ~ 3576137 (+)

Expression


Co-expression Network