LOC113523717 (c2cd2)


Basic Information

Item Value
gene id LOC113523717
gene name c2cd2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 460262 ~ 476591 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312541.1
TGATGTGGTAACTTTTTGAACAGATGtgttagctagcaggctagcaagaaaagaaaagaaaaaaagaaaagaaagaaagaaagcacagaCGAGATGAGCGCCGGAGAGCACCACAAAGCGgcgtcagtgtcagtgtcagggTTAGTGCTGGTGTTGGTGAGGtcagagaaaagcagagagTGCTGACAGTTCCGAGTTCGGATGTTGTTAGCATGTTAGCGCGCAGTTAGCAGGCTAACGCTAGCTGAGGGAGCAGTCCGAGCCGCCATGGTGTCCGAGTCGCTGCAGTGGCTGTGTCTGCTGACGCTCTTCCTCGCCTCGGTGGTCACTTTAATCATCTATTTAGTGCAGTATTTCGGTGTTTTCCGGAGCAGGAGCGGGACTCGGGCCGGAGGAGGGGAGTGTGAGGAGGCGGACCGGCTGCTGAGCTGGCTGCTGGAGCTGAAGAGCTGGAGGACGGAGTGGAGGAGAGCCTGGATCCGAGCCctgaaccagaaccagaaccactGCTGCAgcgcacagGGAGCGATCCAGCTGGTGTTTGAGGAGGATGGTGTTCAGTCGTCAGAACTCAGCGTCCATCACGTCTCCAGCTTTAAGAGATCACCTGGACGGAAGgatgtGCAGTGTGAGGTGATCGGAGACAGGCTGCAGTTTTCTCTCAGCGCGTGTCTGAACTCGGGCTCTTCTCTGAGATACAGCGTAAAAATCTCACCGCTACAGCTGCAGcTGGCCCTGCAGATGACAGAGGTGGATGGAGAAGTTCAGATTACGTGGGGACTGGAACATCTGGACCTGACACAGATGCAGCTCACACCCAGTTACAcaccgggcgggtcggtgtgtgtgagtgaagcaGCAGTGAAGAGCAGGCTGCAGCAGGTTCTGTGTGAAACGCGAGCCTCAGTGACTTTGAGCAGCCGGACAGCGCAGCCTGCAGAGCTGAAGGAAGTGAGGAACAGGATTTCGGAGGTCTCCTCTCCCCCCAAACCCCCTCGCGCTCACCAGTGGAAACTCTTAGTGAAGAACATCCGGGTCACGTACAGCCAGGAGGACGGAGctgcaggcAGTGGAAGTCCTCAGTGTGTTCTGCAGTTAGATGATCCTCCTCAGAAGATGGCCACCTCAGTGCTGAATGACGCGAGCGACCCGGTCTGGGATCAGCCCTTTATCTTtgaacTCAGCGGCAAGTCGAAGGTGCTGAACATCCAGCTGCTGGATCATGGGAAACCTCCAGAGAGCTGCGTGCTCggggaggtgtgtgtgctgtttaatCTGGTGACGAGGAGCCCGAGAGGACAGCACACTTTCACActgatgaacacacaccaacTAATCGGATCACTGACTactgagTTGTCCTACCTGGAGCCGAGTGAAGTGCGCACTTGGCAGCCTCCTACTCCGGCGCCTGCCAAACGAGTGGAGATGGACCGAACCGTGATGCCGTGCGGAACCGTCGTCACCACCGTCACTGCGGTGAGGTAGCGACCCAGGCTTTAAACCCTCTTCCTACAAAAATCGATGAAACCTCCACCCAAAGCCAAGCTGACGGAGAGGCGGGTGTCTGAACAGCCCTCAGTGCTGGGAGCTAAAGTCAGCAAAGCCTTATCTGCATCAgatacagAGCTGCTGATGCTGAACGGAACCGACCCGGTGGCCGAGGCTGCGATCAGACAGCTGTACGAATCGGCTAAGCAGAAACTCAAATCTCCCGTCAAAAAGAGCACCATCATCATCTCTGGAGTGGCaaagGCGCCGCTGTCTCAGGATGAGATGAGTCTGATGTCCGACTACGCTTCTACGATGGACGCCTCCATGGCCGAATCGCCGGAGTGCACGAGGCAGGAAACGGAGACGCTCTCTGAGCACTGCGTCTCGGACACGACCGATCCGTTGGAGGGTCCGAGCGGAGCGGACTGGGAGAGTCAGACTGGAGAGGAATCGGACAAagcctcgctctctctctgcgtcTCCGAAACCAGATCCAAAAAGGGGAAAGGCAGCTTCCTCCATAAAGGCGCCCGGCTGTTTTTCCGGCGCCGGCAGCAGAGGAAGGAGCCGGGGATGAGTCAGTCCCATAACGACCTGCAGTACCTGGAGCAGGCCGAGGAGCGACGCACAGCCACCTTCAAGCGCATCATCAACCGCAAACTGCTGCACAAACACAAGAGCAAAGCCAACGGCGTCCAGACGTCAGAGCTCCATCAGCCTCACtaacaccctcacacacacacacacacacacacgccctcactaacaccctctcacacacacacacacaccctcacatacacacacaaacacacaaacacaagagcAAAGCCAACGGCGTCCAGACGTCAGAGCTCCATCAGCCTCACtaacaccctcacacacacacacacacacacacacacacacacacacaccctcacacacacacacacacacacac

Function

symbol description
c2cd2 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312541.1 True 2437 mRNA 0.56 14 460262 476591

Neighbor

gene id symbol gene type direction distance location
il2rga LOC108276805 coding upstream 108334 341671 ~ 351928 (+)
LOC113538163 LOC108276802 coding upstream 214844 226364 ~ 245418 (+)
znhit2 znhit2 coding upstream 390874 66588 ~ 69388 (+)
mrpl49 mrpl49,LOC107580894 coding upstream 393972 63779 ~ 66290 (+)
tbl2 tbl2,LOC107734476,LOC107691705,LOC107686137,LOC107728824 coding downstream 24631 501222 ~ 507099 (+)
cux1a LOC108276869,LOC106568027 coding downstream 99492 576083 ~ 612550 (+)
kctd7 kctd7,LOC106603469 coding downstream 139239 615830 ~ 621347 (+)
rabgef1 rabgef1 coding downstream 146795 623386 ~ 636006 (+)
atg101 atg101,LOC107751375,LOC107686213,LOC107589731,LOC107691654,LOC107577413 coding downstream 239614 716205 ~ 719326 (+)
G261106 NA non-coding upstream 36504 422871 ~ 423758 (+)
G261099 NA non-coding upstream 38222 418689 ~ 422040 (+)
G261090 NA non-coding upstream 132794 327262 ~ 327468 (+)
G261068 htatsf1,LOC108444522 non-coding upstream 149713 285248 ~ 310549 (+)
G261067 NA non-coding upstream 151543 308084 ~ 308719 (+)
G261101 NA non-coding downstream 40733 517324 ~ 615120 (+)
LOC117599335 ppm1e non-coding downstream 180814 657405 ~ 684364 (+)
G261173 NA non-coding downstream 228952 705543 ~ 706282 (+)
G261176 NA non-coding downstream 234833 711424 ~ 713068 (+)
G261190 NA non-coding downstream 294667 771258 ~ 773261 (+)
ska2 ska2,LOC108276801 other upstream 23964 379020 ~ 436298 (+)
LOC117599405 NA other upstream 148276 311476 ~ 311986 (+)
fgf13b fgf13b,fgf13,fgf13a,LOC108276808,LOC105907432,LOC107693932,LOC107720625,LOC107548853,LOC107084161,LOC107560535 other upstream 193489 254946 ~ 266773 (+)
wdr74 wdr74,LOC107548868 other upstream 355473 97689 ~ 104789 (+)
prdm15 prdm15,LOC107578663,LOC108413920,LOC106512200,LOC106511912,LOC107728867,LOC107686138 other downstream 5797 482388 ~ 500186 (+)
bcl7ba bcl7b other downstream 30688 507279 ~ 569183 (+)
trim37 trim37,LOC107691657 other downstream 127135 603726 ~ 656209 (+)
G261178 NA other downstream 249236 725827 ~ 727725 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other downstream 625198 1101789 ~ 1112278 (+)

Expression


Co-expression Network