pcyox1 (pcyox1)


Basic Information

Item Value
gene id pcyox1
gene name pcyox1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20702515 ~ 20711026 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312564.1
AATAACTTCTAAAATTCTGTACAAATACGATCAGTTTTAATCAGTTTGTTGCTGGAAGCGGTTGGGGAATATCCCAGCGCAACAAAAGACAATATTTTTCTGCTTTAGAGGTAGTTATTTAGgtGCTTATACCTGTGAAGATCTAAACCCTCATCATGTCTATGAGAACCCTAGCGTTCAAGGCTCTTCTGTTCCTTGTGCTTTGTCAGGCTGGACAGCAGGGTCTAGCCTCTGCCTCTGAGCAACGAGAACCTCCAAAGAAAATTGCCATCGTCGGAGCTGGGATTGGAGGAACATCAGCAGCTTATTTTCTCAGGCAGGAGTTTGGACCCAGCGTCAAGATCGATGTGTACGAAGCAGGCACTGTCGGAGGACGTCTCGCTACGGAGAACATTGACGGACATGATTATGAAACGGGAGGCTCCCTGATACACCCGCTTAATTTGCATATGAAGCACTTTGTGGATAGACTAGGTCTGTCATTTCGTGCTGGAGTCCCTTCAAAAATGGCCATCTTTGACGGGAAGGGTCTGATGTTCGAGGAGAGCGATTGGTTCATCGTGAACTTCCTGCGCATGCTGTGGCACTACGGCTTCAACTCACTTCGCATGCACATGTGGGTGGAGGGGATTCTGGACAAGGTCATGAGGATTTATCAGTACCAGCAGTTCGGCTACTCGTTCTCGAGCGTTGAGCGACTGCTGCATGCCATGGGCGGCGACGAGGTTCTCGCTCTGCTCAACCAGACGCTGGAAGAGGCCATGCTGGCTCAGGGCTTCTCTCAGGCCTTCATCAATGAAATCGTCACCCCGATATCACGTGCTAGTTACCACCAGTTACCAGCAGCTTTTAATTTCTCCTGCGCAGGTTCCGTGGCCCTGTCGTGCGCTGACTCGGGCCTCTGGGCTGTGGATGGAGGTAATAAGAGAGTCTGCTCTGGGCTTCTGTATCACAGCAAAGCCGAACTCATTCCAGCACGTGTGACCAACATCGCTATCAAAACGAGGCCCTCTAAAAGCGGCACCATCGCAAACTTTTATGAAGTGAACTACGTTGGTGATTCTGGCTCCGCCCACTCCCTTTACGACATTGTGGTTTTGGCCACGCCCCTCCACCAGGGTTTGTCTGATATCAGTTTCTCAGGCTTCTCTCCTTCCCTGCCTTCACACTTTCCCGGGGCCTACCACCAGATAGTGACTACGCTAGTGCTCGGGCGTCTCAACGTCTCCTACCTGGACGCCAGACGGAATCCGAGCGAGTTTTTCGTCTCTGACATTTTAATGACGGAAAATGAGAATCTGGGCATCGCCAGCTTGAACTTCCTGGACCCTGTCCACATCACACCAGGCTACTCACGCCCTCCGGCCAGCCAGCCAGCAGTGTGGAAGGTTTATTCTACCGAGCCCCTGACGGAGGAGCAGCTGAGGATGCTGTTCGTCTCACGAGAGCGTGTCGTGGAGAAGAGCTGGCTGGCGTGTCCTTCATACAGAGCGCCAGAGCGTCAAGCTCCAAGCTTCATCCTCCACCACAACCTCTAttacctcaaccccattgagtgGGCAGCGTCGTCGATGGAGATGAGCGCCCTCTCAGCGCGAAACGCAGCGCTGCTCGCCAGCCATCGCTGGCACGGAGACACGTCGAAGGTGGATCAGGAGGATCTGCACGCTCGCCTCCGGGGGGAGCTGTAGAGATGCAAGAGGCACTTTTACCAATGAGAATCTTGAAATCTACACTCCACTGGCTGTTTgagtgaattgtgtgtgtgtgtgtgtgtggtgtttttaatTTGATGAAAAAGGTGATGCTAATTATCATAACATCCAAGGAGGCTTTCCATTCTAAtttcttttctgttgtttttcagcaaatCATTAGTTTCTTGGACTTTCTTAGAAGAAAGTTGACTTATAAAGACAACTTTAAAATTCTTTCCCAACACTAGAGAAGTCTTTTAGAGATAAAGCTACAGGAGCAGTTCGACCTAAATAATTCCCTCCCCTTACCCAGCTGCTGTCAGTCATCATTTAGTTTTTGCACTGAAgcagtatacactatatggccaaaagtttgtggacacctgaccatcacacccctgTGTGGTTCTTCCTTAAACCGGttccacaaagttagaagcacacaatgcATGTGATGTCTTTACAtattctgtagcattatgatttctcttcactggaacgcAAACCTGTTCCAACACGACGAtatccctgtgcacaaagcgagctccaggaagacatggtttgccaaagttggagtggaagaactcgagtgtccacATACTGTGGATAATATAGTGTCAACCGCTAATAATAGGGTTGTAAGTGAAGGTTCATAGGGCATCtgtttgaatgaatgagaggtttttactttcgTTTCATCCTCCACATGGTTTACATATAAGGAATAGGAAGGTAAAGACGAAGCTTCCAAATAACAGATAGACAAACAAACACCTATGTAACCAACTCAAATATTCAGGTTCTTCACACCATCCTTGTAGATCAGTATAATAAGACAGAAGAAATTGGAATGTATTGCCTCCATGGACTGTTTTTAAGTTTAGTAAGTGATACTAATTTGTAAAGAGGAGGTAGTCTATAAGGGCTAAAATGCTTTGGGTGAAATACTCAGGCCACTTTCATTCTACTTTATATTACTTATCTTACTAAACAAACACTTTATAATACAGATTAGATGAAACACTGCAAAATCCTTTTTAAGTGATTTCTAATGAACTTCCTCTTGGCCTGATGGACTTGCAGCGAAACACTCCTTTAATATACACAAGCACCGGTTAATAAAAGCAAGAATCCGCACAGATGACCTTTTAACCTTGTTGTTTGGTCACGCTATAAGGCCATTTTTTAACCACTTCCCCTGTGTTGCTTCTGCTTTTACTGAAAAGTAAGCTACAGTGGCCGTGTTGATTTATGCGTTTTCTAGATACGTAAATTTGTTTTTGACTTTTCGAGATGTTTTGCTGAGATGTTaagcattaatttaaaaacaatccTTACTAAGAAATACAATTATACAACTAGACATTTGCAAATAGCTGGTTATAATCCACAACATTCATAACCATCAAAGATATTCTTCTGATTCCAAAATTGCAAACTGTGACACCCCAAAGTGTAAATGTGCTGCACTACTTCTTTATTATACttctgtatagtcagtgttatagagttaacaagcgaatatgtctgtatgttgattgatctaagtgctactttgtttaccgctgatgctgtgagcagccatgttgctttgatgtcacttgctgaactcggactTGAGGAGACCGTCCGGAGTTCTCGTGGAGGAATTTAGAGTCGAGGGGGTGTTTTCTGATGTCTTAAGATGCAGTAATGCTCTGTTTTTAATAGTCATTTATCTGTTAAAAAATGCAGATTCATGTAAAACACATGAAAGGATGCAGATATCAAACCAGCTTCCGCTGGCAGTTCATCAAATTTAACCTTACCTTTAAAACTCACAAAAGAAAGGCGGGacttcataataaaaaaaaaaaatcaaaattgattaaatactaattaataCCTAGACTAGTGGTCACATGACACTTTTGTCTTCTTGATATCTTTTTCCACAGTTGCAAAAAATAGCATTAGCTGTTCACTGAACCACACTGAATCACAACACTATCAGAATAAACTGCTGTATAGGTGAACCTTTGTTTCCATTTGTTTCCCAAATCtcgagtctgattggtcagatgttggtcaggtgttgattaattttctataacagcagctctgactgtatttcctactgcaaggcaaatcacttCTTCCAATACATCTAAtaatgtttctgtagtaacagctaaagtgaaggaacaactgtttatagctgttatgacgtaagtgataacaggaactaactcgttttgTGTTGTGGGCGTTCCAcaaaaagtaactataaacagataaaaaaaaaaaacaacaaatatcaTACCAccctgtttttgattttttttttcttccagttaTTTTTACCCTTAATGAGTTTTGAATGATCAGTACGTCGTAAATGTCCTCTAACCGAAGGTATAAAGGACGTGATTGTATGTGAAATGGACCTTTTTCTCCAAGGGTGTAGCAGAGAGAAGGTCCAGTGTGACCACTGCTTGAGAATTATagtttttgtaatgaaataaaactaaaattataatgtataaacaaCAGATCAGTCGTAATTTAACAGTAATGGTTCCCACGTtgtttttcctgaactgaactAAAGTGCCAGAAATGTATTCAATTCTttctataacacactgtatcaGTATGAAACAACACTCAgtgttaaaatacacaaaaagaagCCGTTTGtgttcttatttctttttttaccaGGGAGTGTCTACAGCACTGAGTGTCTATTATGTGGATTATGTTTTAACAAGGGTGtgatttgtattcattttagtcttgaagttaaaaaaaaaaa

Function

symbol description
pcyox1 Predicted to enable prenylcysteine oxidase activity. Predicted to be involved in prenylated protein catabolic process. Predicted to act upstream of or within prenylcysteine catabolic process. Is expressed in Kupffer's vesicle; forerunner cell group; and yolk syncytial layer. Orthologous to human PCYOX1 (prenylcysteine oxidase 1).

NR:

description
prenylcysteine oxidase 1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0030328 prenylcysteine catabolic process biological_process
GO:0001735 prenylcysteine oxidase activity molecular_function

KEGG:

id description
K05906 PCYOX1, FCLY; prenylcysteine oxidase / farnesylcysteine lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312564.1 True 4494 mRNA 0.42 7 20702515 20711026

Neighbor

gene id symbol gene type direction distance location
gmcl1 gmcl1,LOC107688092,LOC106564898 coding upstream 4852 20684972 ~ 20697663 (+)
snx24 snx24 coding upstream 32028 20663103 ~ 20670487 (+)
loxa lox,LOC108277371,LOC107562574 coding upstream 41420 20647807 ~ 20661095 (+)
mpx LOC100335032 coding upstream 78574 20608815 ~ 20623941 (+)
sftpba LOC108276523 coding upstream 360132 20330486 ~ 20342383 (+)
stard7 stard7,LOC107713384,LOC107687872 coding downstream 39147 20750173 ~ 20761668 (+)
smarcad1b LOC108277297 coding downstream 133299 20844325 ~ 20864250 (+)
ska1 ska1 coding downstream 153539 20864565 ~ 20870543 (+)
slc2a11l LOC108277148 coding downstream 160351 20871377 ~ 20880169 (+)
nt5c2l1 nt5dc4,LOC108435390 coding downstream 173001 20884027 ~ 20901267 (+)
G272427 NA non-coding upstream 42221 20565033 ~ 20660294 (+)
G272426 NA non-coding upstream 138451 20562176 ~ 20564064 (+)
G272361 NA non-coding upstream 237469 20409723 ~ 20465046 (+)
G272360 NA non-coding upstream 254837 20442699 ~ 20447678 (+)
G272347 NA non-coding upstream 392639 20309591 ~ 20309876 (+)
G272450 NA non-coding downstream 5485 20716511 ~ 20737500 (+)
G272470 NA non-coding downstream 38335 20749361 ~ 20749647 (+)
G272770 NA non-coding downstream 216596 20927622 ~ 20931583 (+)
G272803 NA non-coding downstream 279317 20990343 ~ 20990551 (+)
G272940 NA non-coding downstream 768874 21479900 ~ 21492672 (+)
G272408 NA other upstream 159561 20540325 ~ 20542954 (+)
G272374 NA other upstream 273372 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 303568 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 759010 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 853689 19848755 ~ 19848826 (+)
LOC113544125 LOC100304632 other downstream 648493 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 765061 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 1211525 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 1658230 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1911402 22622428 ~ 22665570 (+)

Expression


Co-expression Network