nln (nln,LOC107743138)


Basic Information

Item Value
gene id nln
gene name nln,LOC107743138
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24503863 ~ 24525223 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312565.1
AATGGCCGAATGCTGAGTTAGTGCACTCTGTAGGGAGGAAGTGTTGGTTTGAGACGCGCCCTTTCTGCCACATGCTCAGTGAGTCAAACGCGTGAGTGTGAGTCTGCTGCTGAAAGATGATTCTCCTCAGAGTGGCTGTGAGCAGAACCGGAACCAGAACCGGGATCGGGACCGGGAGCAGagtgttTGCGTTCTGCTCGAGGCTCAGAATGACTCTCCTGAACACGCTGGACATTTCAGCTAAAAGTTGTTCGAGTTCCTGTGAGAACCGGAGCGAGCTGAGGTGGGACCTGAGCCCGGAGCAGATCCGGCAGCGGACCGAGAAGCTGATGCAGAGGGTAAAGCATGCGTACGACTCGGTGGCGGCGGTGGACGTGGAGAAGGTGTGTTATGAGAACACGCTGCAGGTTCTAGCAGAGGCCAAGCTGGATTACGCTGCGTCCCGGCACATGCTGGACTTCCCTCAGTACGTCTCCCCGCGTAAAGACGTGCGATCTGCGAGCACCGAGGCAGACAAACGCCTGTCCGAGTTTGACGTGGAGATGAGTATGAGATCAGACGTGTTCCACAGACTCATCGCACTACAGGAAAGACGGTGTAATGATTTATTCCCCGAGTCGAGGAGGTTCATGGAGCGTCTGATTAAACTGGGGAGGAGAAACGGACTGCATCTGTCTGCTGACGTGCAGGAGGAGATCAAACAGCTTTCTAAAAGAATAAGTGAACTTTCAATAGATTTCAACCAGAATGTGAATGAAGAAAGCACAGTGCTGATGTTCTCTTCAGAAGAGCTGGGTGGTCTGGCGGAGAGTTATTTAAACGGCTTGGAGAGGACGGAGGACGGGAGGTACAGGGTGACGCTGGCGTACCCCCACTATTTCCCTCTGATGAAGAGATGTCACGTTCCAGAGACCAGGAGGAAGATGGAGGCGGCTTTTCACAGCAGGTGTAAAGAGGTGAATACGGAAATCCTCGAACAGCTGATCGAGTTGCGTGCGAAGGCGGCTAAGCTGCTGGGCTTTAGCAGTCATGCTAACTATGTGCTGGAGATGAATATGGCCAAGAACTCCAGCACCGTGTCTCACTTCCTGGATGAGTTGTATGAGAAGCTGAAGCCGGTGGGTCAGAAGGAGCGTCAGTTCCTCCTCTCACTCAAGCAGGCCGAGTGCCAGAGGCGGGGCCTGGACTTTGACGGACAGCTGCACGCGTGGGATCTGCCGTACTACATGAACCAGGTGGAGCAGGTGAAGTTTGCGGTGGATAAGGACAAGCTGATCGAGTATTTCCCGCTGAAGGTGGTGACTGAGGGTCTGCTGGGGATCTACCAGGACCTCCTGGGGCTCCGTTTCCACCAAATCCAAAACCCTCACGTGTGGCACGAGAGCGTGAAGCTCTACACCGTACTCGACTCCATCACGGGCGAGGAGATCGGACGCTTTTATCTGGACCTACATCCCAGAGAAGGGAAGTACGGCCACGCGGCGTGTTTCGGCCTGCAGCCCGGGTGTCTCGGCCCTGACGGGAAGCGTACCATCCCGGTGGCGGCCATGGTGGCCAACTTCACCAAACCTTCACGTAACTGGCCGTCTCTACTGCAGCACCATGAAGTGGAGACCTTCTTCCACGAGTTCGGTCACGTGATGCACGAGCTGTGCTCCAGGactcGCTATGTGGAGTTCAGCGGCACGCTGGTGGAGACGGACTTTGTGGAGGTTCCCTCTCAGGTGCTGGAGAACTGGGTGTGGGAGAAGGAGCCGCTCAGGAGGATGTCTCGCCACTACATCGACGGCAGCTCCATCCCCGACAGCCTGCTGGATAATCTCATCACCTCCAGAGTGGCTAACACTGgtctgATGAACCTCAGACAGATCATGCTCAGTAAAGTGGACCAGGCTCTCCACACCAAGTCTTCTGCTGACACCGCGGCCGAGTTCTCCAAGCACTGCAAGGAGATTTTGGGAATCCCGGCTACGCCAGGAACGAACATGACGGCGAGTTTCAGTCACCTGACCGGAGGTTATGATGGTCAGTATTACAGCTACCTGTGGAGCGAAGTTTACGCCATGGACATCTTCTTCAACCGCTTCAGAGCAGAGGGACTCATCAGCCCCGAggttggtAAGGAGTACAGGAGGGTGGTTCTGGAGGCCGGCGGCTCAGTGGACGGGTCGGAGATGCTGAAAAGGTTTCTGGGTCGTGAACCGAGTCCGGACGCTTTCTTTCAGTGTAAAGGCCTCGCAAATCAGCGAAATATTTACACCTGATATTTATCACAATTTTAGCAcaatcaatattattattattattattattattgtaatattttcagAATTTCGTTTCTCTGAAGGAAACGAAGCGCCACAGagtttaaaattaaatcattttggTTTTAACGTCA
>XM_034312566.1
GGAACCACACGCAGAATCCGAGAACTACACGTTCCAAACATCCAAAACTCGTCCGCATGAAACAGCGGCACGGCCGGACCGAAAGGTCAATCTGTGACACATTCTGAAGTTTACAGTGTTATAAGAACCATAAAGCTGCTATGAAGACCAACGCTTCTTACCATGCTAATGAACGCTGGGTTGTTAATGAGGCTGGCCATGTCGAAGCCCAGTCTGGACACCGtctgaggacacacacattccccGCAGAGAGCGAATGAACAAACACTTCAACTACACTTCCAGGATTCCAGGTTGTTCTACTCACAGAACCCGAggattctctctttttttgctcaGCCGTCTTTAAGTTGGATTTGTAGGTGTCGTTTTCCGGATCCAGTACCAGCGCCTTCTTAAAagtgttTGCGTTCTGCTCGAGGCTCAGAATGACTCTCCTGAACACGCTGGACATTTCAGCTAAAAGTTGTTCGAGTTCCTGTGAGAACCGGAGCGAGCTGAGGTGGGACCTGAGCCCGGAGCAGATCCGGCAGCGGACCGAGAAGCTGATGCAGAGGGTAAAGCATGCGTACGACTCGGTGGCGGCGGTGGACGTGGAGAAGGTGTGTTATGAGAACACGCTGCAGGTTCTAGCAGAGGCCAAGCTGGATTACGCTGCGTCCCGGCACATGCTGGACTTCCCTCAGTACGTCTCCCCGCGTAAAGACGTGCGATCTGCGAGCACCGAGGCAGACAAACGCCTGTCCGAGTTTGACGTGGAGATGAGTATGAGATCAGACGTGTTCCACAGACTCATCGCACTACAGGAAAGACGGTGTAATGATTTATTCCCCGAGTCGAGGAGGTTCATGGAGCGTCTGATTAAACTGGGGAGGAGAAACGGACTGCATCTGTCTGCTGACGTGCAGGAGGAGATCAAACAGCTTTCTAAAAGAATAAGTGAACTTTCAATAGATTTCAACCAGAATGTGAATGAAGAAAGCACAGTGCTGATGTTCTCTTCAGAAGAGCTGGGTGGTCTGGCGGAGAGTTATTTAAACGGCTTGGAGAGGACGGAGGACGGGAGGTACAGGGTGACGCTGGCGTACCCCCACTATTTCCCTCTGATGAAGAGATGTCACGTTCCAGAGACCAGGAGGAAGATGGAGGCGGCTTTTCACAGCAGGTGTAAAGAGGTGAATACGGAAATCCTCGAACAGCTGATCGAGTTGCGTGCGAAGGCGGCTAAGCTGCTGGGCTTTAGCAGTCATGCTAACTATGTGCTGGAGATGAATATGGCCAAGAACTCCAGCACCGTGTCTCACTTCCTGGATGAGTTGTATGAGAAGCTGAAGCCGGTGGGTCAGAAGGAGCGTCAGTTCCTCCTCTCACTCAAGCAGGCCGAGTGCCAGAGGCGGGGCCTGGACTTTGACGGACAGCTGCACGCGTGGGATCTGCCGTACTACATGAACCAGGTGGAGCAGGTGAAGTTTGCGGTGGATAAGGACAAGCTGATCGAGTATTTCCCGCTGAAGGTGGTGACTGAGGGTCTGCTGGGGATCTACCAGGACCTCCTGGGGCTCCGTTTCCACCAAATCCAAAACCCTCACGTGTGGCACGAGAGCGTGAAGCTCTACACCGTACTCGACTCCATCACGGGCGAGGAGATCGGACGCTTTTATCTGGACCTACATCCCAGAGAAGGGAAGTACGGCCACGCGGCGTGTTTCGGCCTGCAGCCCGGGTGTCTCGGCCCTGACGGGAAGCGTACCATCCCGGTGGCGGCCATGGTGGCCAACTTCACCAAACCTTCACGTAACTGGCCGTCTCTACTGCAGCACCATGAAGTGGAGACCTTCTTCCACGAGTTCGGTCACGTGATGCACGAGCTGTGCTCCAGGactcGCTATGTGGAGTTCAGCGGCACGCTGGTGGAGACGGACTTTGTGGAGGTTCCCTCTCAGGTGCTGGAGAACTGGGTGTGGGAGAAGGAGCCGCTCAGGAGGATGTCTCGCCACTACATCGACGGCAGCTCCATCCCCGACAGCCTGCTGGATAATCTCATCACCTCCAGAGTGGCTAACACTGgtctgATGAACCTCAGACAGATCATGCTCAGTAAAGTGGACCAGGCTCTCCACACCAAGTCTTCTGCTGACACCGCGGCCGAGTTCTCCAAGCACTGCAAGGAGATTTTGGGAATCCCGGCTACGCCAGGAACGAACATGACGGCGAGTTTCAGTCACCTGACCGGAGGTTATGATGGTCAGTATTACAGCTACCTGTGGAGCGAAGTTTACGCCATGGACATCTTCTTCAACCGCTTCAGAGCAGAGGGACTCATCAGCCCCGAggttggtAAGGAGTACAGGAGGGTGGTTCTGGAGGCCGGCGGCTCAGTGGACGGGTCGGAGATGCTGAAAAGGTTTCTGGGTCGTGAACCGAGTCCGGACGCTTTCTTTCAGTGTAAAGGCCTCGCAAATCAGCGAAATATTTACACCTGATATTTATCACAATTTTAGCAcaatcaatattattattattattattattattgtaatattttcagAATTTCGTTTCTCTGAAGGAAACGAAGCGCCACAGagtttaaaattaaatcattttggTTTTAACGTCA

Function

symbol description
nln Predicted to enable metalloendopeptidase activity. Predicted to be involved in peptide metabolic process and proteolysis. Predicted to be active in mitochondrial intermembrane space. Is expressed in hypaxial myotome region; musculature system; myotome; and pectoral fin musculature. Orthologous to human NLN (neurolysin).

NR:

description
neurolysin, mitochondrial-like isoform X2

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01392 THOP1; thimet oligopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312565.1 False 2398 mRNA 0.54 13 24511482 24525223
XM_034312566.1 True 2617 mRNA 0.53 14 24503863 24525223

Neighbor

gene id symbol gene type direction distance location
ppwd1 ppwd1 coding upstream 38763 24457036 ~ 24465100 (+)
cwc27 cwc27,LOC107744252,LOC107713303 coding upstream 144740 24310031 ~ 24359123 (+)
cops4 cops4,csn4,LOC107685106,LOC107558694 coding upstream 207138 24276082 ~ 24296725 (+)
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding upstream 251795 24233760 ~ 24252068 (+)
ugcg ugcg,LOC107571241,LOC107558686,LOC107713309,LOC107658668 coding upstream 492813 23971438 ~ 24011050 (+)
apba1b LOC108276879 coding downstream 193506 24718729 ~ 24733547 (+)
G274624 NA non-coding upstream 12007 24491415 ~ 24491856 (+)
G274583 NA non-coding upstream 12662 24403023 ~ 24491201 (+)
G274457 lin54 non-coding upstream 242287 24257907 ~ 24261576 (+)
G274431 NA non-coding upstream 378650 24124736 ~ 24125213 (+)
G274289 NA non-coding upstream 393125 24107648 ~ 24110738 (+)
G274639 NA non-coding downstream 11907 24537130 ~ 24537736 (+)
G274646 NA non-coding downstream 57758 24582981 ~ 24583278 (+)
G274653 NA non-coding downstream 126527 24651750 ~ 24652197 (+)
G274662 NA non-coding downstream 156240 24681463 ~ 24682939 (+)
G274696 NA non-coding downstream 229959 24755182 ~ 24755384 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other upstream 5221 24480599 ~ 24498642 (+)
LOC117599389 NA other upstream 271044 24226154 ~ 24232819 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other upstream 391010 24103073 ~ 24112853 (+)
cdc37l1 LOC108276758,LOC108433523 other upstream 563731 23937978 ~ 23940132 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 1117756 23281561 ~ 23386107 (+)
erbin erbin,erbb2ip other downstream 4755 24529978 ~ 24639642 (+)
zfand5b zfand5,LOC108277070,LOC108428885,LOC107742939,LOC107726558,LOC107705050,LOC107667265 other downstream 74639 24599862 ~ 24658701 (+)

Expression


Co-expression Network