itga2.2 (itga2)


Basic Information

Item Value
gene id itga2.2
gene name itga2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 22792578 ~ 22837618 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312574.1
GTTAGCGCGACACCTGACCGCATCCCCGTCAACATGGAGCTGAGGAAGCGCGCGCTGCTGCTGCCGCTGGTTTTACTGGgttggtGTATTGAACACTCTGAGGGATTTAACGTTGGAACATCAGGAGCCAAAATTTTCTCGGGCACGAAATCGGATGAGTTTGGATACACAGTGCAGCAATTCAGCAATCACCAGGGGAAATGGTTATTAGTGGGAGCTCCCTGGAAAGGCTACAGTCAGAACAGGAAAGGagatgtgtataaatgtgcGATTGCAGGACCTACGACTACCTGCGATAAACTCAACCTACAGAacGCTGTCAACATACCAAACGTGCAGAACATCAACGTTAACATGAGTCTGGGTCTGACCCTGATGCAAACCACCAAAAACCGCGGATTTATGacatGCGGTCCTCTCTGGGCTCAGGGTTGTGCTACTCAGTATTTCTACCCGGGAGTGTGTGCAGAAGTGAGCCCTCTGTTCACTCCTCAACCAGCGTTCTCTCCTGCGCTACAAACTTGCGGTGGGCCGATGGACATCGCTATAGTTCTGGACGGATCTAACAGTATTTATCCTTGGCCTCCTGTTGTGAATTTTCTTAAGCAGCTTTTAGGACACCTTGATATCGGACCCCAGCAATCTCAGGTCAGCATCATTCAGTATGGTGTCGATCCCAAAATGGAGTTCACTCTGGACAGGTATAAAACCAGAGAGACGATCGTTCAGGCGGCTTCGTTGATTCCTCAGAGAGGTGGAACCGAGACAAACACGTTCCGAGCTATTGAGTATGCCAGggtGAACGCTTTTCTAACTACAAACGGAGGACGTCCGGGTGCCAGTAaagtgatggtggtggtgactGACGGAGAGTCACATGATAACTCTAAACGAGACAAAGTCATTCCAGCATGCGAGAAAGACGGCATCACTCGCTTTGGCATTGCTGTGCTCGGGTACTACATAAGGAATAATATCGACAGCAAAAAACTTGTCGAGGAAATCAAGTCAATCGCCAGCAGTCCttcagaaaaatattatttcaacgTGTCTGCTGAAGAGGCTCTGCTGGAGATCGCCGGAACTCTGGGAGATCGCATCTTCAACATCGAAGGCACAGGAACCGGCGGTGAATTTCAGATGGAAATGTCGCAGGTTGGGTTCAGCGCACACCAGACCAAAAACGAGGACGTGATGATGCTGGGCGCTGTTGGAGCGTACGGATGGACCGGAACTGTAGTGCATAAAACTGCTCAGAAATCAGAGATTTTTCCCAAAGAAGCTTTTGAGCGAATCCTTGAAGACAGAAACCACAGTTCACTTCTGGgatactCGGTTACCACTCTGTATAGCGGTTCCACTGAGTACTTTGTGGCCGGTGCTCCTCGCTCTAACCACACGGGTCAGGTCGTGGTgtacacactcaacactcagagaCAACCCGAAATCCGACACTCCCAGAGAGGAGATCAGATCGGCTCGTACTTCGGAAGTGTGCTCTGTCCCCTGGATGTGGACAGTGACGGTGTTACAGACCTTCTGCTGGTTGGAGCTCCGATGTACATGAGTGATGAGAAGAAGGAGATGGGCAAAGTCTACATCTTCACCATTACTAACGGGTTCTTGAGTAGCCAGGGTTTTCTGGAAGGTTCCTCTCCACTGGAGAACGCGCGATTTGGAATGGCCATCGCCGCTGCTCCTGACCTCAACCTGGACGGATTCACCGATGTGGTGGTCGGAGCGCCGCTGGAGGAGAACGGCCAGGGAGCCGTTTATATTTACAACGGAGACGCAAAGAGCATCAGGAAGCAGAGCTCACAGAAAATTCTTGCCATGAAACTGGACTCAAAGTTGAGGTACTTTGGACGTTCTTTAGACGCCAGTGGAGATCTGAACGGAGACTCGGTCCCAGACGTCTCAGTGGGGAGTTACGGGAATGTGCTTCAGCTCTGGTCCAGGGGAGTGGCGGTGGTGACGGCCCGGGTCACGTTCACACCGGACCGGATCAGCGTCCTGAGTAAATCGTGTAGCCTCAATGGGCGGATGGTGTCCTGTTTTAAAGCTAAAGTCTGCTTCAGCGCAGAGTTCAAACCGTCAAACCCCGTCGGACCTGCAGAGATTAAGTACAACATGACGCTGGACGCTGACCTGCAGTCGTCTCGAGTCAGCTCCAGAGGTCACTTCGGGAACTCGGAGCGAGTGGTCCAGCAGGACATCGGCGTGTCCACGGCCGAGACGTGTGAGGAACATCAGGTGTACGTTCAGGACACTCCTGACCTCGTCAACTCCATCGCCGTCCGCGTCGACATCAGACTCCAGCAGCCGGACTCCAGCCCCGTGCTGGATGCCTTCAGTCCCACCGCATGGGAGTTTTTTATCCCATTTTCTAAAGACTGTGGTGTTGATGAAGTGTGCTACAGTGACTTGGTGTTGAGCGTCGAGAGAGAACCACCGACTAGCTCCTCACTGCTGGTGAGTCATAAGAACAGAAGGCTGTCGCTGACCGTGACGGTGATGAACAGGAAGGAGAATGCGTACAACACCAGAGTGATCGCACGCTACTCCAGCAACCTGTTCTACTCCTCCGTTACGCCGTCTaGCGATGGTACCGAGGTCAAATGCACCTCCATTAAGGATACCGAAACAGTCACGTGCCAAGTGGGATATCCAGCACTCAGGACTGACCAGTCGGTAACATTCGAGATTAATTTTGACTTTAATTTGGCACAATTACAAAAGGAAGTCAAAGTGGTTTTCGAAGCCCAgagTGACAGTGCAGAGGAAACTCCAGCGGATAACGGCGAGACGGTGATGATCCCCGTCCAGTACATGACAGAGATCATCCTCAGCAGAGAAGCCAACTTGAATGTTTACTTGCTTGACGAAAAGGATGAAATTACAAACCCGATAAAGACCTACAGTGACATCGGCCCAGAGTTCAAGTTCACTCTcaagGTTTCCGGAGCAGTTTTTCCAGTCAGTCTTGTTTACCTCAGAGTGTCGCTGCCCATCAGTACGAAATCAGGGAATCAGCTGCTGTATATAACCTCAGTCGAGGGCACACCGcggAGTGATGTTCAGTGTGAAACCCAAGCGTTGATTGACCCGTTTAACATCGGAGAGACAGAATACACAGCCAAATTCACCAAGGAGAGCTTCAGAGGAACCAGTCAcctgAACTGCGGCTCGGCCGTGTGTAAGCAGCTGACGTGTGTGCTGAAAGACCTGGGCGTGAAAACGGAGTACTACATCGGCGTGTCCACGAGGATTTGGAACGGAACGTTCTCTCAGgctgatTTCCAGTCGGTCGTATTAGACGTGAACGCTCAGATCGAGACGTCTCAGCCTGATCTACTCGTTATCGCCCACAAACAAGTGACGGTCGACGTCACGGTGAGTAAACCCGGAGCCAAAGGTGATGTACCTGTCGGTGTGATCGTGGGCAGTGTGATCGGAGGATTACTCCTGCTGGCTGCTGCTGTCGCAGTGTTGTGGAAGCTGGGCTTCTTTAAGCGCAAATACCAGCAGCTGCAGAGAAACGAGGACGGCGCTGAAGCAGAGGGACTACAGGACAACGCAGGACAACCGTGAGACCAACACTGATGTCCGATCCGTTTAAAGACtgtctgatctcagatcagctgGAGTCAAAGATGTAACCCTCAGAGAGACGGAGTTCAGATCAGCAGCAGCGAGGCGAAGAACCTCAACCAGACACCAGCAGCAGGAAACGACTGTGATCTGGCTCAAATGGAAAACTGTCTGAAAAGCCACGAATGGACAACAATCCGACTGTTGTGCTGCCGTGGAAAATCCGCACATTCGCTGTTTATTTTCACCAACACTagagaattttcatttttcactccGAGTCTCTGAATCAGCGTACGAGGACCTCCTTTCccgtttgtttttcactttcatttggaaatactgtaaatattactgATAGAGAAATattgttgaaaatgaaaatggcacGCAAACTGCACTGACTTTTTCCCtgacagaacagaacaaaattACTATGGAAAATAAGAGTTCTTcctttttagatattttaatt

Function

symbol description
itga2 Enables collagen binding activity involved in cell-matrix adhesion and collagen receptor activity. Involved in several processes, including cell adhesion mediated by integrin; cell surface receptor signaling pathway; and mesodermal cell differentiation. Located in cell surface; focal adhesion; and plasma membrane. Part of integrin alpha2-beta1 complex. Implicated in several diseases, including Behcet's disease; artery disease (multiple); blood platelet disease (multiple); diabetes mellitus (multiple); and von Willebrand's disease (multiple). Biomarker of type 2 diabetes mellitus.

NR:

description
PREDICTED: integrin alpha-2

GO: NA

KEGG:

id description
K06481 ITGA2, CD49b; integrin alpha 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312574.1 True 4066 mRNA 0.50 29 22792578 22837618

Neighbor

gene id symbol gene type direction distance location
atp6v1b2 atp6v1b2,LOC108277294,LOC103034689,LOC108433525,LOC107687718,LOC107678016 coding upstream 12291 22767226 ~ 22780287 (+)
vsig8a LOC108277295 coding upstream 26303 22706961 ~ 22766275 (+)
igsf9a LOC108277156 coding upstream 365757 22379920 ~ 22426821 (+)
dpysl2b dpysl2b,dpysl2,LOC108277094,LOC108427246,LOC107687778,LOC107678023,LOC107560521 coding upstream 440862 22315294 ~ 22351716 (+)
bnip3lb bnip3lb,LOC108277095,LOC108427248,LOC103036208,LOC107687791,LOC107561399,LOC107678042 coding upstream 482025 22291081 ~ 22310553 (+)
fstb LOC108276855,LOC108433530 coding downstream 14863 22852481 ~ 22863830 (+)
snx18b LOC108276851 coding downstream 111275 22948893 ~ 22957601 (+)
rasgef1bb LOC108276874,LOC108433534,LOC107597626,LOC107686427,LOC107595538 coding downstream 167386 23005004 ~ 23016226 (+)
antxr2b LOC108276875,LOC108433535,LOC107685134,LOC107597625,LOC107744079,LOC107686426 coding downstream 182310 23019928 ~ 23039549 (+)
paqr3b paqr3b,LOC108276876,LOC108433513,LOC107713330,LOC107597624,LOC107744080 coding downstream 202848 23040466 ~ 23045078 (+)
G273473 NA non-coding upstream 230253 22562104 ~ 22562325 (+)
G273226 NA non-coding upstream 754429 22037839 ~ 22038149 (+)
G273258 NA non-coding upstream 810387 21981979 ~ 21982191 (+)
G273248 NA non-coding upstream 829711 21962664 ~ 21962867 (+)
LOC113544190 NA non-coding upstream 1300502 21488112 ~ 21492076 (+)
LOC117599377 NA non-coding downstream 154924 22992542 ~ 22994797 (+)
G273683 NA non-coding downstream 199791 23037409 ~ 23038616 (+)
G273644 NA non-coding downstream 210303 23047921 ~ 23062345 (+)
LOC117599346 NA non-coding downstream 231319 23068937 ~ 23073938 (+)
G273719 NA non-coding downstream 297961 23135579 ~ 23135832 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 127008 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 417703 22369256 ~ 22374875 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other upstream 758581 21922551 ~ 22033997 (+)
LOC113543995 NA other upstream 1313698 21476087 ~ 21478880 (+)
LOC113544125 LOC100304632 other upstream 1430834 21359519 ~ 21361744 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 212194 23049812 ~ 23145567 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 406942 23244560 ~ 23274653 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other downstream 443943 23281561 ~ 23386107 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 1100360 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 1265455 24103073 ~ 24112853 (+)

Expression


Co-expression Network