adamts6 (adamts6,LOC107685101,LOC107713302,LOC107744255)


Basic Information

Item Value
gene id adamts6
gene name adamts6,LOC107685101,LOC107713302,LOC107744255
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24378185 ~ 24454955 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312579.1
ggttttcattcattaatggAGCTGAAGTTTAGTCGGAGCAGAGCGAAGAGAAATCCCTCCTCAGCTCTTTGTTCCTGCAGCGGGACATCTGCTGGGCTTTTTCCGTGGGTCGGAACCGGAGAGAAGAGAGCGGAGTAAAGCGCGAGCAGGAGCacgagcaggaggaggaggagcaggaggagagcGCGCGCGGAACCGGGACACTGCACGAGAGCCAGTGTGAGAGAACATGAGGACGGCAGACAAATGGACAGACTCAAACGAGAACCTCCCGCTGTAGATCTGCTGCTCTGGACTTACTTGAAGTAATTTGGCCTCCCTCACTCATGGCTGGCACACGTTCGGAGGCACATGCGAGTCAGACCTGGAGGCTTCGACTTTCCAAAGACTTTTAAGCTTCCTGGACGTCTTTGTGGACTGAAGTTTGAGAGCGTCAGAGATGATCATCAGATCGGATCTGTTATGGTGCTGGACTGACTGAACTGTTTTAATCCTCGTGTAGCTCCCCCCCAAACCCCCTCCCCCATGTCAGACCTTCTCTAAATTATGGAAATTTTGTGGAAGACGCTGACTTGGATATTGAGCCTGCTTTTGGCCGCTGCTGATCCTCAGAGCCTTTCTTACAGTTCTCAAGAGGAGTTTCTGTCTCATCTGGAGGACTACCAGCTCACCGTGCCTGTTCGGCTGAACGATAAGGGCGAGTTTATGAGTTACACTGTGAAGCAGCACCGGCCCGGACGCAGGAGACGGGCACTGGATCAAACCGGCCCGGACGCCGCGGAGACCAGGCTCTTTTACCGCCTGTCAGCTTACGGCAAGCACTTTCACCTAAACCTGACGCTCAACCCCAACCTGGTGTCCAAACATTTCACTGTAGAGTACTGGGGCAGGGACGGGCAGGAGTGGCGCCACGCCGTGGTGGACGATTGCCATTACGTTGGATACCTACTGGATCAGTACGACACTACAGGAGTGGCACTGAGTAACTGCAACGGCCTGCACGGCGTCATCACCACAGAAGAAGAGCAGTATTTAATCGAGCCCCTAAAGGACGTGTCCTCCAGAAACTCCAGCGAGTTCCGGCTCTCCGGCGAAGGCCAGCCGCACgttatttataaaaaatccTCCGTCCCTTTGCGGCAGGAGCACAGTGAGGAGCTCAGCTGCGGCGTTTCAGACCTCACGATAAAGCGGACGCCATGTTGGAAAAGCAGCCACGCCCCCGTGGCTCCGCCCCCCTCGCAGAATAACCACACCTCTGGCGGTCCTCACCGTCAGCGGCGCTCCATCAGCACCGAGCGCTTCGTCGAGACCCTGGTGGTGGCCGACAAGATGATGGTGGGCTACCACGGCCGCAAGGACATCGAGCACTACATCCTGTCCGTCATGAATATTGTTGCCAAACTTTACCGTGATGCCAGTCTTGGAAACGTTGTGAACATTATCGTGACCAGGCTGATTGTTCTGACGGAGGACCAGCCGAATCTGGAGATTAACCACCACGCAGATAAATCGCTGGACAGTTTCTGTAAGTGGCAGAAATCGCTGTTGTCTCATCAGGGGGACGGAAACAGCATCCCGGAGAACGGCATCGCTCACCATGACAACGCTGTTCTCATCACCAGGTACGACATCTGCACCTACAAGAACAAGCCCTGCGGTACTCTCGgtttggCGTCAGTAGCTGGAATGTGTGAACCAGAACGGAGCTGCAGTATTAATGAAGACATCGGCCTCGGCTCCGCTTTCACCATCGCACATGAGATCGGACACAACTTTGGAATGAACCATGACGGAATCGGGAACGCCTGCGGGACTAAGGGGCACGAGACGGCCAAGCTGATGGCGGCGCACATCACAGCCAACACCAACCCCTTCTCCTGGTCCACCTGCAGCAAGGACTACATCACCAGCTTCCTGGACTCAGGTCGGGGAACGTGTCTGGACAATGAACCCCTGAAGCGGGACTTCCTGTACCCCACCGTGGCTCCGGGGCAGGTGTATGATGCCGACGAGCAGTGTCGCTTTCAGTACGGCGCCTCCTCCAGACAGTGCAAATATGGGGAAGTGTGTAGAGAGCTCTGGTGCCTTAGCAAAAGTAACCGCTGTGTCACTAACAGTATTCCGGCCGCAGAAGGAACGCTGTGCCAAACCGGCAGCATTGAGAAAGGGtggtgttatcAGGGCGAGTGTGTGGCGTTCGGGACGTGGCCGCACAGTGTGGACGGAGGCTGGGGGCCGTGGACGCAGTGGGGCGAGTGCAGCCGGACGTGCGGCGGTGGAGTTTCCTCGTCCATGCGTCACTGTGACAGTCCAGCGCCGTCCGGAGGAGGGAAGTACTGTCTTGGGGAGAGGAAGCGCTACAGATCGTGCAACACCGACCCTTGTCCAGCAGCGTCGAAGGACTTTCGCGAGAAGCAGTGCGCCGACTTCGACAGCATGCCGTTCCGTGGGAAATATTACAGCTGGAAGCCTTACACAGGAGGTGGCGTGAAGCCCTGCGCGCTCAACTGCCTGGCCGAGGGCTATAACTTCTACACAGAACGTTCTCCTGCAGTCATCGACGGTACACGCTGCCAAGCTGATTCTCTGGACATCTGCATCAACGGAGAGTGCAAGcaTGTGGGCTGTGACAACATCCTGGGCTCGGACGCCAGAGAGGACATATGccgtgtgtgtggaggagaCGGCAGCACATGTGAGACCATTAAAGGCCTGTTCAATGACTCGCTACCCAGAGGAGGATATATGGAAGTTGTCCAGATTCCTAAAGGTTCCGTCCACATTGAGATCCGGGAAGTGGCCATGTCGAAGAACTACATCGCTTTAAAATCCGAGGGAAACGATTATTACATCAATGGAGCATGGACCATCGACTGGCCTCGCAAGTTCGACATTGCAGGAACGGCGTTCCACTACAAGAGACCGACGGATGAGGTGGAGTCTCTGGAGGCACTCGGGGCCACCACGGAGAACCTGGTCATTATGGTGCTACTGCAGGAACAGAATCCAGGTATCAGGTACAAGTTTAACGTTCCCATCCAGCGCACGGGCAGCGGGGACAACGACGTGGGCTTCACCTGGCACCACCTGCCCTGGTCTGAGTGCTCAGCCACCTGCGCAGgagGCTCGCAGAAACAGGAGGTGGTTTGCAAAAGGCTGGACGACAGCTCGGTGGTCCAGAACAGCTACTGCGATCCTGACGGAAAACCACCGGAGAACCAGAGGCCCTGTAACACGGAACCGTGTCCACCTGAGTGGTTTATCGGCGACTGGTCAGACTGCAGTAAGTCGTGTGACGGAGGGACGCGGATGCGCACGGTTCTCTGCATCCGCAAAATCGGCCCTGCAGAcgaggagaacctggaggacgTTCACTGCCTGACACATCGACCAATCGAGCGCGAGAGCTGCAACAATCAGTCCTGTCCTCCACAGTGGGTTCCTCTGGATTGGTCTGAGtgcactccGAAGTGTGGCCACGGCTTTAAACACCGCATCGTGTTGTGTAAGAGCAGTGATCTGACTAAAACGTTCCCACCAGCGCTGTGTTCAGAGCTGATCAAACCCCCGGTGAGGATGCGCTGCAGTCTGGGCCGCTGTCCACCTCCACGCTGGATTCCCGGAGAGTGGGGACAGtgttctGCACAGTGCGGTTTGGGACAGCAGATACGGACGGTGCAGTGTTTGTCCTACACCGGACAGCCGTCTAGCGATTGTCCCGAGGCTCTGCGTCCCAGCATGTTACAGCCGTGTGAGAGTAAATGTGATGCCACGCCCATTGCCAACGGTGACGAGTGCAAAGACGTAAACAAGGTGGCGTACTGCCCACTGGTGCTGAAGTTCAAATTCTGCAGCCGTGCCTACTTCAGACAGATGTGCTGCAAAACCTGCCAAGGACACTGATGATCCTgcagagagagacgagagagaccAAGACGACGTGGGCTGGAGGACAAAGctgcttcctctttctctctctcctctctctctctctctctctcacacacacacacacacacacacacacacacacctgcttttTCAGCCCTGTGGAACCCATACCACTGATCAGCAGCATGCTGAcacgttttatttttattttcacttctgTGAAGTGGGAACTTAATAATAtggtcattattgttattttattataataataattattattgttgttattataattgttattgacgtctgtctatctgtctgtctgtctgtctgtcgtaATCCAAAGTGCTGGACACATCATATGCAGAAGCGGCACCGCTAAAGAGGTTTATTATAACTGTGTAATACCCAAaagtgtttcacatgttctctcttacacacacacacacacacacacacacacacacacacttgggtcTGCTGTGGCAGTGAATTCTCCTAATATAATCCCATTTTCATACAATTTTGTACAGAAGtggacaaaataaaagaaactgctaaaatatatgaatttacTGCTGGGAAAAAGTGCGACTGATGAccagtgggcgtgtctttgagactatatatggactcaaagacacgcccttcAGAATTTCTGCATAGGAATACATTTGTGATTGCACACAGAGGATTTCTGCAATATTAGAAATTCTATCAGCTGATAAGAGCTGAGTGGTGAAAGAAAAGGGAAGATGATGGGCGGTGCTGGTGTGACGTGTTTCTGGAGGAAAAGTACTGCTTCAGCGGACAGCTAACCGTATCTCGCTACGCCGCTAGTGTGTTGTTTGGGAATGACGCTAGCTTGTTAGCTACTTATaaagaacatcatcatcatcattcagcTACTTTGTGCTAGCATGTTAGCTCCTGCTAATCAGTTGCTCAGAATGTGATTGTATGTACAAATTGCTGCTTTCCTGAAACTGTAATAAGAAAAAGGTCCTCCATGTTGAGTCTTCCAGAAACGCATGACCTCAGCACTTCTCTCGTTTTCTATTGGCTTACACGTCCGGGATTTGCGGGGTTAAAGTTCATCTAGATTAACTCGGAGGTATAAAATGGGTCGCTACCAGAAGCGACTCCCAGAAGGAGATCCAGATTTTAAATTCCTCCTGCTGAAAACTCACACAGAATCCGTGCGGAATCCCGGATCTCAAACACTTCCCTCTGTAAGACTCACATGTTGCCATTTTGGAAACTACTTTAATGACTTCAAGTCCTATTCACGTGGTGTTTCCGTTATTTTGTCCACATCCTGTAGCTCGGCTCGACATCCATCAGACAGACATTAAGGATTATTAACTCCACATGGCCACaatataacactttataaactTTCCCTAATCACATTTCACGACATTTTTAATTGTCGGATTGGTTTAAAATTTGCGGCTGGAGTAAACGCCGCTCAGTGAGGTGCAGAGGCAGCGCTGGTGCTGTTTGGTGCTCGTTTGGAAGTTGTGAGTGTTAGGATTCCAGATGTTCCAGCCGTGGGGCCACCTGTTTTACTAAGCCGAGTCACATGACCACAGGCCAAAGAATTCCACCATTGTGTTTGTGACACTCAAACAAGGCCTGAAAATCACATTAGAAAGTAAAGGAGGACGGAACAACGCCCAGATACGGCTTCCAAACCTCCgtcaaggaaagaaaaaaaaaagacatagccattctgtttctgttttcttttttaaagaatgttcaAATCCGTGATATTTTTTGTACTGTTTAAAATGCCTGGGGTCTGAAAGACATTGTATGCGCTATAATGAGAGGATATGAATTCATTTGTAGCAGAAAAAATCCAGACGCAATCACGCGCCCACCTCCTCCCCGGCGGAGAGGACCGAGGATCGTGTCTCCTTCAGCATTCGACTGGAGCTCAGAATAAATGGTCAAGGCGTTTAGGGGGGACACGCCAGAGCTCGAACATCCGCTCAGAATAAGGACTACCTCCTCCAGACACATGCCTTCCCTCGTTCCCTCGTTCCCTCGTTCCCTCACTCCTCTTCGGAAACACACTTCACAGAACCCTCCATGATCAGTGGtgcttttttccctgttttGTTCCCTCCTTCTTCTGACCTTCTCAAGAGGAAGCCTTGATCCTTTCAGTCCTCTGGTGCTAACAAGAGCTTCATTTCTCACCAACCCTTAAAGGAGGACAATCATGGGCTGT

Function

symbol description
adamts6 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and thymus. Orthologous to human ADAMTS6 (ADAM metallopeptidase with thrombospondin type 1 motif 6).

NR:

description
PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 6

GO: NA

KEGG:

id description
K08621 ADAMTS6; a disintegrin and metalloproteinase with thrombospondin motifs 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312579.1 True 6136 mRNA 0.52 26 24378185 24454955

Neighbor

gene id symbol gene type direction distance location
srek1ip1 NA coding downstream 68360 24306452 ~ 24309825 (-)
lin54 lin54,LOC107744261 coding downstream 103932 24259708 ~ 24274253 (-)
LOC113543977 NA coding downstream 184312 24118023 ~ 24193873 (-)
LOC117599328 LOC107690397,LOC107716059,LOC107572820 coding downstream 206971 24165377 ~ 24171214 (-)
ptbp3 ptbp3,LOC107658670,LOC107744247 coding downstream 282864 24041031 ~ 24095321 (-)
trim23 trim23,LOC107658681 coding upstream 10142 24465097 ~ 24477076 (-)
sgtb sgtb,LOC107558703,LOC107667268,LOC107548671,LOC107705058 coding upstream 45907 24500862 ~ 24509560 (-)
smc5 smc5,LOC107726549,LOC107734934 coding upstream 203853 24658808 ~ 24697852 (-)
mamdc2b LOC108277069 coding upstream 243836 24698791 ~ 24718235 (-)
tjp2a NA coding upstream 278593 24733548 ~ 24749451 (-)
G274489 NA non-coding downstream 130628 24245196 ~ 24247557 (-)
LOC113543934 NA non-coding downstream 160507 24216715 ~ 24217678 (-)
LOC117599329 NA non-coding downstream 251978 24125158 ~ 24126207 (-)
G274425 NA non-coding downstream 268737 24108470 ~ 24109448 (-)
G274421 NA non-coding downstream 274083 24103011 ~ 24104102 (-)
G274771 NA non-coding upstream 36511 24491466 ~ 24492114 (-)
G274781 nln non-coding upstream 58333 24513288 ~ 24651673 (-)
G274804 NA non-coding upstream 91245 24546200 ~ 24547152 (-)
G274810 NA non-coding upstream 109687 24564642 ~ 24617704 (-)
G274819 NA non-coding upstream 136285 24591240 ~ 24591960 (-)
LOC113544170 plac8 other downstream 77153 24297476 ~ 24301032 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other downstream 124873 24251548 ~ 24253312 (-)
nrarpa nrarp,nrarpa other downstream 514917 23859305 ~ 23863268 (-)
G274342 slc27a4 other downstream 575901 23798359 ~ 23802284 (-)
LOC113544130 rusc2 other downstream 3171015 21189969 ~ 21207170 (-)

Expression


Co-expression Network