ppwd1 (ppwd1)


Basic Information

Item Value
gene id ppwd1
gene name ppwd1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24457036 ~ 24465100 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312584.1
TGTgagccgcacacacacacagacacacactcactcacaccgcAGAGGAAAGCGGGTGTTTGAACATGGCGTCCGGCGCGGAGAGTGAAAGTTTGGAAAATAAACGCAAGTTAAAGGCAGATGAAGGcgaggaagaggagggagaggaggaagagggagatGTGTGGGTCGGTCCGCTGCCTACTGAAGCTGCTCCTGCTAAGAAGAGAAAAGTACTGGAGTATGAGAGAGTGTATCTGGATAATCTGCCGTCTGCTGCTATGTACGAGCGGAGCTACATGCACCGTGACGTCATCACCTACATCATCTGCACCAAAACGGATTTCCTCATCACGGCAAGTCAGGACGGTCATGTGAAGTTctggaagaagaaagaagacgAAGGAATCGAGTTTGTGAAACACTTCCGCAGCCACCTGGgtgtgatCGAGTGTATTTCAGTCAGTGCTGAGGGCGCGCTCCTCTGCACCGTCGGAGATGATCAGGCCATGAAAGTGTTCGACGTCGTGAACTTCGACATGATCAACATGCTGAAGCTGGAGTTCCACCCGGGTCAGTGTGAGTGGATCTATAACCCCGGGGACGCCATCAACACGGTGGCCTGCTCCGAGAAATCCACGGGGAAGATTCACGTGTACGACGGCCGAGGCAGCAACCAGCCGCTGCACACGTTTGATAAGATGCACTCGTCTCCTCTGTGTCAGATCCGGCTGAACCCGCGCTACCGCGTCATCGTGTCGGCCGACAGAGCCGGGATGCTGGAGTACTGGACCGGCCTTCCGAGCGAGTTTAAATTCCCCCGGCAGGTGCAGTGGGAGTACAAAACCGACACCGACCTGTACGAGTTCGCCAAGTGTAAAACGTTTCCCACCAGCCTGGCCTTTTCACACGACGGAAAGAAGATGGCCACCATCGGCGCCGACCGCAAAGTCCGGATCTTCCGCTTCCTGACGGGGAAACTCATGAGGGTGTTCGACGAATCGCTAACCatgttcACAGAGCTGCAGCAGATGAGACAGCAGCTGCCGGACATGGAGTTTGGCCGCAGGATGGCGgtggagagagagctggagaagGTGGACGGCATTCGACTGACCAACATCATCTTCGACGAGACGGGACACTTTGTGCTGTACGGAACCATGCTGGGCATCAAGGTCATCAACGTGGAGACCAACCGgtgtgtgaggATTCTAGGGAAACAGGAGAACATCCGTGTGGTGCAGCTCAGCCTCTTCCAGGGCGTGGCGAAGACCTTGAAGGCGGCGCCCACCATCGAGATGAAGGCGTCGGATAACCCCGCCCTCCAGAGCACAGACCCCGACCCCACCATCTTCTGCACCGCCTTCAAGAAGAACCGCTTCTACATGTTCACAAAGCGCGAGCCAGAGGACACCAAGAGCGCCGACTCGGACAGAGACGTCTTCAACGAGAAGCCGTCCAAAGAGGAGGTGATGGCGGCCACGCAGGCAGAAGGTCCGAAGAGGGTCTCGGACAGCGCCATCATCCACACCACTATGGGAGACATCCATCTAAAGCTCTATCCTGTGGAGTGCCCCAAAACCGTGGAGAACTTCTGCGTCCACAGCAGGAACGGCTACTACAACGGACACTTATTTCATCGTGTCATCAAGGGTTTCATGATCCAGACCGGAGACCCCACAGGCACGGGGATGGGAGGAGAGAGCATCTGGGGCGGAGAGTTCGAGGACGAGTTCCACTTCAGTCTGAGACACGACCGGCCGTACACACTCAGCATGGCCAACGCCGGACCAGGAACCAACGGCTCTCAGTTCTTCCTCACGGTGGTGCCCACGCCGTGGCTGGACAACAAGCACACGGTGTTCGGACGGACCACCAAAGGGATGGAGGTGGTGCAGAGGATCTCCAACGTCAAGGTCAACCCAAAGACAGACAAACCGTACGAGGACATCAGCATTATCAACATTACCATCAAgtagaacacacaacacacacacacacacacacacacggagtgaC

Function

symbol description
ppwd1 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein peptidyl-prolyl isomerization. Orthologous to human PPWD1 (peptidylprolyl isomerase domain and WD repeat containing 1).

NR:

description
peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform X1

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K12736 PPWD1; peptidylprolyl isomerase domain and WD repeat-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312584.1 True 2001 mRNA 0.56 11 24457036 24465100

Neighbor

gene id symbol gene type direction distance location
cwc27 cwc27,LOC107744252,LOC107713303 coding upstream 97913 24310031 ~ 24359123 (+)
cops4 cops4,csn4,LOC107685106,LOC107558694 coding upstream 160311 24276082 ~ 24296725 (+)
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding upstream 204968 24233760 ~ 24252068 (+)
ugcg ugcg,LOC107571241,LOC107558686,LOC107713309,LOC107658668 coding upstream 445986 23971438 ~ 24011050 (+)
ambp ambp coding upstream 611641 23835167 ~ 23845395 (+)
nln nln,LOC107743138 coding downstream 38763 24503863 ~ 24525223 (+)
apba1b LOC108276879 coding downstream 253629 24718729 ~ 24733547 (+)
G274457 lin54 non-coding upstream 195460 24257907 ~ 24261576 (+)
G274431 NA non-coding upstream 331823 24124736 ~ 24125213 (+)
G274289 NA non-coding upstream 346298 24107648 ~ 24110738 (+)
G274239 NA non-coding upstream 510529 23945616 ~ 23946507 (+)
G274193 NA non-coding upstream 587839 23868854 ~ 23869197 (+)
G274624 NA non-coding downstream 26315 24491415 ~ 24491856 (+)
G274639 NA non-coding downstream 72030 24537130 ~ 24537736 (+)
G274646 NA non-coding downstream 117881 24582981 ~ 24583278 (+)
G274653 NA non-coding downstream 186650 24651750 ~ 24652197 (+)
G274662 NA non-coding downstream 216363 24681463 ~ 24682939 (+)
LOC117599389 NA other upstream 224217 24226154 ~ 24232819 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other upstream 344183 24103073 ~ 24112853 (+)
cdc37l1 LOC108276758,LOC108433523 other upstream 516904 23937978 ~ 23940132 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 1070929 23281561 ~ 23386107 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 1182383 23244560 ~ 23274653 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other downstream 15499 24480599 ~ 24498642 (+)
erbin erbin,erbb2ip other downstream 64878 24529978 ~ 24639642 (+)
zfand5b zfand5,LOC108277070,LOC108428885,LOC107742939,LOC107726558,LOC107705050,LOC107667265 other downstream 134762 24599862 ~ 24658701 (+)

Expression


Co-expression Network