trim23 (trim23,LOC107658681)


Basic Information

Item Value
gene id trim23
gene name trim23,LOC107658681
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24465097 ~ 24477076 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312585.1
GATTTGTGATTGGTCCGCAGGGTGATGATGGTGCTGCCTCAGGATGGCGGCTGCTGTCGGTGTAAATAAGCAAACAAGCGCAGCATCGATGGAGCCGTGTGTCCGCCATGGCAGAGGAACCACAGGCAACACGGTGAAGGTGTTGGAGTGTGGCGTGTGTGAGGACGTGTTCTCTCTGCAGGGTGATAAAGTTCCTCGGCTCCTGCTGTGCGGTCACACCGTGTGTCACGACTGTTTAACGCGTCTCCCTCTTCATGGCAGGGCGGTGCGCTGTCCTTTCGACAGACAGGCCACGGAGCTCGgagacTCGGGTGTGTGGGGTTTGAAGAAGAACTTTGCTCTGCTGGAGCTGCTGGAACGGCTGCAGAACGGTGCGTCCAATCAGTCCGGCATGTCAGAAGAAGCCCTGAGAGAGATGGGAGAGTGCATCATACGGTGTGACGAGGATGAGAGCCACACTGCGTCGGTGTACTGCACGGTGTGCGCTACACACCTGTGTGCCGAGTGTTCTCAGCTCACACACTCCACCCGCACGCTGGCCAAACACCGCCGCGTCCCGCTGGCCGACAAACCGCACGAGAAGACGCTGTGCCCTCAGCACCAGGTCCACGCTATCGAGTTCGTGTGTCTGGAGGAAGGCTGCCAGCCCGGGCCGCTCATGTGCTGCGTCTGCAAAGAGTACGGCAAGCACCAAGGACATAAGCATGCAGTTCTGGAAGCTGAAGCCAATCAGATCCGGGCGTCCATCTTGGACATGGCGCACTGCATCCGCACCTTCACCGAGGAAGTGTCCGAGTATTCCAGGAAGCTGGTGGGCATCGTGCAGCAGATTGAGGGAGGGGAACAGATCGTAGACGACGGAGTGGGCATGGCTCATACAGAACATGTTTCTGGCACGGCGGAGAACGCTCGGTCCTGTGTGCGTGCGTACTTCGCCGACCTCCACGAGACGCTGTGCCGTCAGGAGGAGATGGCGCTCAGCGTGGTGGACGCTCACGTCAGGGAGAGGCTCATCTGGCTCCGACAGCAGCAGGAGGACATGACCATCCTCCTGTCTCAGGTGTCCACCGCCTGCCTCCACTGTGAGAAGACCCTGCAGCAGGATGACTGCAGGGTGGTTCTGGCGAAGCAGGAGATTAACAGATTGCTGGAAACtctgcagaagcagcagcagcagtttaCAGAAATGGCCGATCACGTTCAGCTGGATGCAGGCATCCCTGTAACATTCACCAAgGATAACCGCGTACACATCGGCCCCAAGATGGAGATCCGGGTGGTGACGCTGGGGCTGGACGGCGCAGGAAAAACCACCATCCTGTTCAAACTGAAGCAGGACGAGTTCATGCAGCCCATCCCCACTATAGGCTTTAACGTGGAAACTGTGGAGTATAAAAACCTGAAGTTCACCATCTGGGACGTTGGAGGGAAACACAAACTGAGACCGCTGTGGAAGCACTACTACCTGAACACACAAGCGGTGGTGTTTGTGATTGACAGCTGTCACAGAGACAGACTGATGGAGGCTCACAGTGAACTGGCCAAGCTGCTGACGGAGAAGGAGCTGAGAGACGCTCTACTTCTCATCTTCGCCAACAAACAGgacgTCCCCGGTGCCGTGTCGGTGGAGGAGATGACGGAGCTCCTGAGCCTCCATAAGCTGTGCTGTGGGCGGAGCTGGCACATTCAGGGCTGCGACGCCCGCAGCGGTACGGGTCTGCACGAGGGTCTGGACTGGCTCTCACGCCAGCTGGTGGCTGCAGGGGTTCTGGACGTGGCCTAACGGACCCGAGTACGGTACCACAACCAGCAGTGAGCGCTAATGAGGAGCAGTTAGCATGCGAGGGGACTCTCGGTGTCACGCTAACTCACATTTAACCACCAGTTACAGTCATCAACTAGTCTCACGGCAACTAACTAACCGAACACCGACGCAACGTTACCCTGATTTTTTAGCGTTTTAGGTTGAAAGTGATCGTCTTGTGTATTTACTACCAAAcgactttaaaataaaaataataaacctaaAGTTGCATCATCACTTCGGAGCGTTTGAAAGAGTTAAGACGTTGTTGTGAGGTaccagctcttttttttttttttttaaataaagtacacTAACGATAGCAGTAGGCTGTAAAATTCACTGAAGTTAACGTTTACTGAAGCAACACGAATATCAGCGCTAATAAAGCGAGGATAAAGTGATAACGTTACAGCGCCGATATTCTGTTCCTGTTCAGTcgtatatgtatataaacatgCTTTCTGAAtgaatttgtgatatttttttcattatttatttcagtttgtgGTGCATTAGTGCAGGTATGGAGTAGAAAACAACGTTACGTTAAACTCttgttactgtttatttatattttgaaagaaaagaacGAAGGCTGTTAGGATTTTGTGAAACGTTTTAGTCGGGATGGCGTGTGGTACTGCTGTGTTTAAACAACTGCATATGCttgtaaagcatttaaaaagattttaatcaTTGTCCTTCTGCACAGCTTTAAAAGCTTTTAGTACAGTAAAGTTCACTTTCCGCTGCTTTAACCGCTACAGCGCGTTAATATACAGCTATTACTCCGAGTTAAAATAAACCTCGTCCTGTTACatgtacagattttattttaactgaaacATCATAGGAGCTtgggtttgttgttgttgttgttgttgtttttggtttaaatcacacatttttctctcactgctatgtaatgtgtagagattaAAGCGCATGTGTAAATCTTTTCCTTCACTCTTCAAACAAACAACGCTCGAgtttgtaaatgattttcttCCTAATGCGAGTTTTAGTCAACAAGCACAGAGCACACCTGAACATTTATTTGTTGTGAACTtgactgcctttttttttttttttttttttgggaaaaatatcCATAATTGTTATCCGATTAAAACAGAACAGTGGAAATGTCTCGAGTGTGTTAATCATACACTATTATACATCcaggttgaaaaaaaagaactttattattattataatacaaaatCAGGACCAGGACAGtca

Function

symbol description
trim23 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in lysosomal membrane and plasma membrane. Orthologous to human TRIM23 (tripartite motif containing 23).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM23 isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K07963 TRIM23, ARFD1; tripartite motif-containing protein 23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312585.1 True 3049 mRNA 0.49 11 24465097 24477076

Neighbor

gene id symbol gene type direction distance location
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding downstream 10142 24378185 ~ 24454955 (-)
srek1ip1 NA coding downstream 155272 24306452 ~ 24309825 (-)
lin54 lin54,LOC107744261 coding downstream 190844 24259708 ~ 24274253 (-)
LOC113543977 NA coding downstream 271224 24118023 ~ 24193873 (-)
LOC117599328 LOC107690397,LOC107716059,LOC107572820 coding downstream 293883 24165377 ~ 24171214 (-)
sgtb sgtb,LOC107558703,LOC107667268,LOC107548671,LOC107705058 coding upstream 23786 24500862 ~ 24509560 (-)
smc5 smc5,LOC107726549,LOC107734934 coding upstream 181732 24658808 ~ 24697852 (-)
mamdc2b LOC108277069 coding upstream 221715 24698791 ~ 24718235 (-)
tjp2a NA coding upstream 256472 24733548 ~ 24749451 (-)
pip5k1ba pip5k1b,LOC108428883,LOC107726562,LOC107705047,LOC107667273 coding upstream 284140 24761216 ~ 24777827 (-)
G274489 NA non-coding downstream 217540 24245196 ~ 24247557 (-)
LOC113543934 NA non-coding downstream 247419 24216715 ~ 24217678 (-)
LOC117599329 NA non-coding downstream 338890 24125158 ~ 24126207 (-)
G274425 NA non-coding downstream 355649 24108470 ~ 24109448 (-)
G274421 NA non-coding downstream 360995 24103011 ~ 24104102 (-)
G274771 NA non-coding upstream 14390 24491466 ~ 24492114 (-)
G274781 nln non-coding upstream 36212 24513288 ~ 24651673 (-)
G274804 NA non-coding upstream 69124 24546200 ~ 24547152 (-)
G274810 NA non-coding upstream 87566 24564642 ~ 24617704 (-)
G274819 NA non-coding upstream 114164 24591240 ~ 24591960 (-)
LOC113544170 plac8 other downstream 164065 24297476 ~ 24301032 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other downstream 211785 24251548 ~ 24253312 (-)
nrarpa nrarp,nrarpa other downstream 601829 23859305 ~ 23863268 (-)
G274342 slc27a4 other downstream 662813 23798359 ~ 23802284 (-)
LOC113544130 rusc2 other downstream 3257927 21189969 ~ 21207170 (-)

Expression


Co-expression Network