kdm6bb (kdm6b,LOC108277160,LOC105902372)


Basic Information

Item Value
gene id kdm6bb
gene name kdm6b,LOC108277160,LOC105902372
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1138879 ~ 1159183 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312596.1
gagagagagagagagacagacagagagagacagagagaggggagggggaGAGGGGGACGAGTGTgcaggaagaaaggaaagaaagaatgaatgaaggaacTGCAGTCATCTGTGTGACACCGTCTGTCTGTCAGAGACTGGAAGTGAAGTCAGGTGCTGTTGTTGTGGTGTCACACTTCTGCACTGGAGGGATTCCCACACACACTAGTGTGGCTGGATGTATCACACAGAGCACCAGTATTCTGGCCGGTACTCATGGGACTCCTTCCCCTCTGGCGGTTCCAGCAGGGCTTCATGGGCTCCCGGCTCCAGCCGCCACTTGCCCCCTCCATCCAGGGGCAGTGGTGGAGGGTACCAGTCAACCCTGAGCCATGCGTCAGGAAGAAACTATCACAAAGCTTATAACAATAGACCTCCGGAGTTCAACAGGCACAGAGTTCATGATCACCCCAGAGAGAGAGGGCCAAACAGTAGAGATCGAGTCACATCATGGTCTTGGGGTTCGAATCAGCACCAGAACCCTGACCGGCCCACTATGAATGGATACAGCTCAGGATGTGGAGGACGTGTTCCCAATAATCAGCCTCCAAGGTATGGAGGCCCTCACCAGCAGCACCGGACCCCAACGGCAGACAGATGGAGTCCAGTGGCCTCATCCAGATCATTTCAAAGTCCCTCAATTAAACGTCCGGCCCCCAGAAACCCCTCACCATCAAGAGATGACTGTCCCAGCAAGAGAAGTAAAAGCGTCAGCTCACACCAGGCTCTTCACTCCAAAATTAAGCACCCTATGCCTATGAATCGCCCTCCCTTGTCTCATTTCCCTCGCACCTGTAGTCCTCCATACCGCAGTGATGCCCAATGGAGTCAGTCAAATAAGAGACAGTCTGCTTCAGGCTTTCAAGAGTCTAGTCAGTCCAACAGCAGAGATCACCTCCACAGGATCCATCCAGCGTTCTCATCTACCCTTGGTGGCCCTGGCCAAGATTTCCACAGCTCAAAGTCCCTGAAACTCGGCCACCTCCACTCTTATGGCCACCAAACCCATGATCACCTGGGATCCCATGGAACCAAAGGGGACTGGGAACGTTCTGTACCGCCCTCACCAGCAAACCTCACCAGAGTGCCTTATAGCCCCCAGCACCAGCCTCCAGCGGGCCCACACTGGCACCCAGTACCTCATGCCAGCCGTGGTTCACCCACGCCAGCCTGGAAGGACAAGCAGAGCAGTGAAACCAGGCGCTCTGGTCTAGGGCCTGAAGAGTGGCAGCAACTGCAAGGGCTGAAAGAGGGAGGGCGGCATCACAGCACCCCAAAACACACCCAGCTCCATTGCAGCCCTGAAGGCAGAAGTGTTCGATATGGCACCACCTGTGGGAGAGCAAGCCTGTCCCCAAGCCCTGAACCTGGGTCCAGCTCTCAGAGGCTAGAGGGGAAGAAAATCAGGGTTTCTAAACACCGAGCTCCATCGACTTACACTAAGCCCAGCCACTCTAACCATGGTGGCCAGGAGAGCCCAATTCGTCGGCTGGACACAGACATGTTAAAGCATGTAGAAACCAAGAAGAGACaccgagagcgagagagaaaacaagagaggAAAGGGGAGGAGGGGGCAGATGAACGAAAGGCAAGGCTACTAAGAAAACTAGaggcaaagaaaaagaaaaaggagaggcaAGAGAAAAGGGGCCACcgggaaaggaaaggaagccATAGAAAAGGGGGACAGTCTGATAGAAATACaaaagatgagaggaaaagaGCAAGGAAAGCAGAGAGAAATGGCATcaagaaaggagaaaaggacCATTTAAGAAGAGAGATGTCTCCCCAGACTCCTTGTGAGTCACCGAGTAAAAGTCCAGACTCAGCCATCTTTGAGTCTCCGCCCCCGGCAGCTTTTACAGACACATCACTGTGTATTCccaaatacacaaaacatgaagaagaggaggagtcCAGCTGTGACTCTGACTCTTCACACACCTCAGGGTTCATTTTGCCCTCCACTCCCCCTTTAGCAAATCAGAACCATCCGCTTCAATGTCAATCAAAGGACATTGCTAATAACATAACCTCAGAAAGTAACAACAGCCTGCCATCCTCTGAGCCTACAAGTCCAAACACCAGCAGTTTTGGGACTCAAGACAAGCAGCTTGACCAGGAGGACATTACCTCTGAACCCCCTGCTAGCAGTGAGCAGGAGTTGCCACTGTTGGATCACTCCAGTggtttagaggaaaaaattcCTAAGCCTGAGGAGAAGAACCAACATGCTCCAGATCTACTTCCTGCCCACAGCAATTCTATGGAGGACCATCTGCGACTGGATCCCTCAGAGCCCCCTGTACTGAGCTGGCAGGGCTCCCCTGTTTCAGATctcagtgaggaagaggaggatgaagcaGGGGCTAACATAGCAGGAGTAATCAGGAGACCAGTCCTCCAGCCAAGCCCCACTCATTCTTCTCCAATCCAAGACCCAGAGGAAATCTGGAAAGAGCCAGGTCATCCCATGGATCTGGACTACCGCCACAGTGACTTGGCAAAACTGTATGGCATTGCTGAGTCTTTAAAAGTtatggaggaagaagaagacaaagaacCCTTAGCAGAGCAGCAGGACAGTAGCACAACAACCTCTCAGGGACCACATCTGCATGACACTGATGATATCATGGCCACAGACAGCCATAAGTACACCTACAGAGGTGGCCCCTTTGGTCGGCCACCTCCCAACACAACGGCTAGGGTCAAATActcttcctcactctcactgGGACCAGAGATACACCATCCAGAGCAGCACAGCCCAACCTCCACATCCCCAAGAGCTGTGTCTCCAGTGGCCATGCCCTTGACCAGCCTTTCCCCTTCCATATCTACCTCAGACCTTTCAAAGCCTGACAACAACATGCAGgcaaatgaagagaaaaaagaggacaGAGTTGTTCAGAAGGAAGGTGATGACATTATCGAAGCTGtagaatcattaaaaaaaccaaTCTGTACCTCTTTGGTGAAGGAGAATGAGGTCAAGGTGTTGCCCTCTGCCTTGTCGCCTGCTACCTTGCAGGCTAAACTGGCACACAGCTGTGAAGTGCTGCTGAACCAGAGCCCCAGTACCCTCCTTTCATCAGAAGTGAacagtggaaaggaaaaatCTAAAAGCAAActggagaagaagaagcaagGGCAAGgcagggacagaaagagagagcagcagaAGAATCAGACAACAAAGACCGGCAGCAGTGATATAACAGAGCCAAGTATCAGAGAGGGAAGACAGCataaaaagcagaaaaggaaTGCCAAAAGTGAGAAACAGCATTGCTCGTCTGGTAGTGAACCTGCCAAACAGCTTGCCAAGGTCTGCAACAAACAAGAGGTAGTAGAGAGGAAGCCAACAGAGACAGCAAAGGAGCAAAGAAAAGGGGATAAGGAGAGAGCCAAAGCTAAAGAGGAAAACAAGGAGGAAGATgcagaaatgacaaaaacaatcTTGTCCAGCGGAAATGGCTCCAGTACAGCTCCAGCTGTTCGGGTTCTGTCCTCTGTGCCGCTGAAAGAGCTAAAGATTCAGCTGGTGAAGCTCAAGATCAGTGGGAGGCAGACCTTCATTGCCTCCGAGTTTGAGCAGAAGAGGATCCCGCTGAAAGAGATTAGCATCAACAACAGTGCAGCAGAGATCATTAGAGCCTGCAAAGATGCGAAGGTGCAGGGTCGTTTCCGTGAGTCCTATCTGCTTCCTTCTTTGTCTGTGAAGCCTGTGCTGAATGTCGAGTCTCAGATTCCCCGAGAGAAGCTCAACCCGCCCACGCCCAGCATCTATctCGAAAGTAAGAGAGATGCATTTTCTCCGGTGCTGCTCCAGTTCTGCACAGATCCCAAAAACCCGGTTACTGTTATCCGAGGCCTGGCAGGATCACTCCGACTcaACCTGGGTTTGTTCTCCACTAAGTCTCTGGTGGAGGCGAACGCTGAACACGCAGTGGAAGTGAGGACTCAGGTGCAGCAGCCGGCTGATGAGAACTGGAACACGACCGGCTCAGCTCAGACGTGGCCGTGCGAGAGCAGCCGATCTCACACCACCATCTCCAAGTACGCGCAGTACCAGGCCTCCAGCTTCCAAGAGAGCCTACAGGAAGAGAAGGACAGCGAGGATGAAGACGAAGGAGAGAGTAAAACAGAGTCAGAATCACAGACTCCATCCAGTAGCCCTTCCTGCACACAGAACTCAGAGCAGAAGTCCTTCGGCAAAATCATCAAGTTTGGTACCAACATCGATCTTTCTGACCCAAAGAGgtggaaGTCGCAGCTGCAGGAGTTGTTGAAGTTGCCCGTGTTCATGCGCGTCTCCTCCACGGAGAACATGCTGAGCCACGTCGGACACACCATCCTCGGCATGAACACCGTCCAGCTGTACATGAAGGTCCCAGGCAGCCGCacaccagGACACCAGGAGAACAACAACTTCTGCTCGGTGAACATTAACATCGGCCCTGGAGACTGTGAGTGGTTTGCTGTACATGAGCACTACTGGCAGGCCATCAGCCACTTCTGTGAGAAGAACGGAGTGGACTATCTGACGGGTTCGTGGTGGCCGGTTCTGGATGATCTATATCGCTCCAACATCCCCGTGTACCGTTTTATCCAGCGTCCCGGAGATTTAGTGTGGATTAACGCAGGAACCGTTCACTGGGTTCAGGCCGTCGGCTGGTGCAACAACATCGCCTGGAACGTGGGGCCGCTAAACTcCTATCAGTATCAGCTGGCCCTGGAGCGCTTTGAGTGGAATGAGGTCAAGAAGGTCAAATCGATTGTTCCCATGATTCACGTCTCCTGGAACGTAGCCCGTACAATCAAGATCACCGACCCAAACACTTACAAAATGATCAGACATTGCCTCCTGCAGTCAATGAAACACATCCAGATCCTGAGAGAGCAGCTCATAGCAGAAGGGAAGAAGATCTGCTACCAGAGCCGCGTGAAGGACGAGCCGGCCTACTACTGCAACGAGTGTGACgtggaGGTGTTTAACCTGCTCTTCGTCACCAGCGAGAACAGCAGTAGGAAGACGTATGTGGTGCACTGCCAGGACTGTGCTCGTCGGAGGTGCTCCACCCTCAGCGGAGTCGTCGTGCTCGAGCAGTACAGAGTGGAGGACTTGATGAACACCTACGATAACTTCAGCCtggctccTGCGCCGTGTTCAAAATGAACCCAAGGTGTTTGATGTCACACAGCCATGACCAAATCTCCTGCTCGCTCGCCAGCAGCAGTGCCAACGTTCAGttctcttgtttattttttatcattatttttattgttgttattattttttaaaatcaaaaaccACTACTGCGGACTCTCCAATCCACAAGCTGTTTACTCGACACTGTTTACAGAACCACATCAGCAGGTGCTTCATTGACTCGCTCGTCTTCCCCCTTCACCAGCTACTGGAGTCACGACGCTGTTACGACGCTGTTATGACGCTGTTACGATGCGTTATAAGCGCTCTGAGGTCAGACTGGCCAGAGACgtgccacacacatacacaccggCACACACTGGACCCAGGCGCGTAatacaaactgtgtttttttttaaatgaagctctcacacacacacacacacacacacacacacaaagagcaaaCAAACTGCTGTGATCGTTCACAATCGCCGAAACATGTGAACTCATTCAGGTACTATTGTAGTTTACATTTATGCAAATGTCTCAGTTTATTTATTCGGCGTCTCTGGTGCTTTTATACGACACGATATAACAGCAGGGGAaggagccacacacacacacacacacacacacacacacacacacacaggcattaCGAGGGGTTGCTACAATGATATTGTCATGAATACATTTACTACAACGCTAAACTTTCTAAATGCTGTTTGCATACTGATCTGGGTgctattatttttacttttttatttttttaatttttaaaggttttcaaaaagagagaaaaaaactttaacacCATTTTGGCCTTGTGAcagatttaaaatggaaaaaaaaacaaaaaatgaagaaagcagTAATGCAATATTAATGATTTTTACTACAATATTGCATTTTTCTCAGAGCATTAACAATTTtcacaaatgttaaaaaaaaaaacaacaacaatacggGTTCAAATCTTATTT

Function

symbol description
kdm6b Enables histone demethylase activity (H3-K27 specific). Involved in histone H3-K27 demethylation. Predicted to be located in nucleus. Predicted to be part of MLL3/4 complex. Biomarker of breast carcinoma and renal cell carcinoma.

NR:

description
lysine-specific demethylase 6B-like

GO:

id name namespace
GO:0031101 fin regeneration biological_process

KEGG:

id description
K11448 KDM6B, JMJD3; lysine-specific demethylase 6B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312596.1 True 6186 mRNA 0.50 22 1138879 1159183

Neighbor

gene id symbol gene type direction distance location
tmem88a tmem88,LOC108276534,LOC106608829,LOC106525123 coding downstream 4717 1128579 ~ 1134162 (-)
LOC113524202 NA coding downstream 40570 1098177 ~ 1098309 (-)
trnas-gcu_6 NA coding downstream 41000 1097798 ~ 1097879 (-)
trnat-agu_11 NA coding downstream 43205 1095601 ~ 1095674 (-)
ap4m1 ap4m1,LOC107702797,LOC107720677,LOC107554303,LOC107742404 coding downstream 48348 1081869 ~ 1090531 (-)
efnb3a LOC108277042 coding upstream 44649 1203832 ~ 1230875 (-)
gigyf1b gigyf1,LOC108277040,LOC108443343 coding upstream 76358 1235541 ~ 1260050 (-)
LOC117599374 NA coding upstream 177477 1336660 ~ 1337281 (-)
npm1a npm1a,LOC108277343,LOC108444574,LOC107676031 coding upstream 306373 1465556 ~ 1471706 (-)
kcnip1b LOC108277344,LOC108444575,LOC103024145,LOC107742366,LOC107552061,LOC107676032,LOC102788752,LOC107720696,LOC101158298,LOC107586147,LOC103363037,LOC101476742 coding upstream 313408 1472591 ~ 1496371 (-)
G261676 NA non-coding downstream 84856 969913 ~ 1054023 (-)
G261686 NA non-coding downstream 140578 997641 ~ 998301 (-)
G261355 NA non-coding downstream 263102 657927 ~ 875777 (-)
LOC113524153 NA non-coding upstream 73180 1232363 ~ 1235521 (-)
G261748 NA non-coding upstream 163997 1323180 ~ 1323407 (-)
G261753 NA non-coding upstream 169388 1328571 ~ 1328776 (-)
G261758 NA non-coding upstream 175557 1334740 ~ 1334940 (-)
G261759 NA non-coding upstream 200956 1360139 ~ 1360361 (-)
lhfpl6 lhfp,LOC103046216,LOC107686123,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC108442104 other downstream 26486 1015807 ~ 1112393 (-)
LOC117599327 NA other downstream 106344 981406 ~ 1032535 (-)
si:ch211-266i6.3 LOC108276750 other downstream 124590 1006914 ~ 1014289 (-)
fhl1b fhl1b,LOC108444522,LOC107718794,LOC107701105,LOC107693928,LOC107548848 other downstream 822554 301010 ~ 316325 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other upstream 106269 1265452 ~ 1410939 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other upstream 616378 1775561 ~ 1780407 (-)
si:ch73-1a9.3 NA other upstream 1520492 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other upstream 1553259 2712442 ~ 2724473 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 1806472 2965655 ~ 2968182 (-)

Expression


Co-expression Network