mtnr1bb (mtnr1bb,LOC108276622,LOC103030874,LOC108423763,LOC107720651,LOC107693905,LOC105890457,LOC107556861)


Basic Information

Item Value
gene id mtnr1bb
gene name mtnr1bb,LOC108276622,LOC103030874,LOC108423763,LOC107720651,LOC107693905,LOC105890457,LOC107556861
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 11234559 ~ 11245766 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312728.1
acccAGGATGGTCGGACGTTGCCTTGGAGAAGAGGTGCGCGCGAAATccgcctttttttttcatctggaGAGGAGCAAAGCGGGGAACAGTGCATGAATTTACGCGCCAAGAGGATGTAAAGGCTCGCGCTGTACCGTCGTCTGTGTGGCATGCAAATGGAGACACCAGGGATATGAGCGTTAACACTTCTGTAATTAATCAATTAAGCAATAggatggttgtttttttttaattatgcaaataaaaaaaacgattaaactgataaaactaaacagatgatgatgaagattaaaaagaaagacagtTTGTCCACTGTTGTTTGAATGAGCTGAGCTTGGAGGAGTAGTCGCTTGAGTTGGTTCCGGCATGTCAGAAAACGTCTCGCGCGTCAGGAGCCTGAGGGAAGTGGGCCATTCTGGCGCGCGCCCCGCCTGGGCCATAGTGCTGCTGGCCAGCGTGCTCATCTTCACCACTGTAGTCGACGTGCTGGGGAATTTGTTGGTCATCATTTCTGTGTTCCGGAATCGTAAACTGAGAAATGTGGGTAACATGTTTGTGGTTAGCCTGGCCTTTGCTGACTTGGTGGTGGCTTTCTACCCATACCCACTGGTCCTGTACGCACTGTTCCATGATGGATGGTCACTGGGGGACACGCAATGCCAAGTGAGTGGCTTCCTAATGGGCCTGAGTGTAATTGGTTCAGTGTTCAACATCACAGGCATTGCTATCAACCGCTACTGCTACATTTGCCACAGCTTTGCCTATGGGCGCCTCTACAGCTTCCGGAACACATTGCTACTGGTGGCACTCATCTGGATGCTGACTGTGCTTGCCATCCTCCCCAACTTCTTTGTAGGCTCACTGAGCTATGACCCCAGGGTCTActcatgcacattcacacagacaGCCAGCAGCTCATACACAGTGGCAGTGGTGGTGGTGCACTTCCTGGTACCCATTGCAGTGGTGACCTTCTGCTATCTCCGCATCTGGGTGTTGGTCATCCAGGTCCGGCGCAAAGTGAAGAAGCAGGAGCATGGCAGGGTGAGACCCAGCGAATTGCGAAACTTTGTCACcatgtttgtggtgtttgtgcTGTTTGCCATCTGCTGGGCACCACTGAACCTTATTGGCCTGGTGGTGGCCGTGGACCCAGAAGTAATGGCACCACGTATCCCTGAGTGGCTGTTTGTGGTCAGCTACTTTATGGCCTACTTCAACAGCTGCCTCAATGCCATCATCTATGGGCTGCTCAACCGGAATTTTCGTAAGGAGTACAAGCGTATTGTAACATCTGTGTGGATGCCACGGCGGTTTGTATCAGAGACATCTAGAGTTGCCACAGATGGCCTGCGAAGCAAACCCTCACCAGCCATCAACAATGAGTGAATACGAGACAATCACTTTTCTCTCTTCAAATGGGAAATGAAGTTTAGTGAAATGCTCACTTGAAGCCCAGCTTTTATTTAATGAGCATGTCATCACTTGTCATTTGGGAAATTTGTTTATGCCTTTTTACACAGCTCAGGgtgcttgttttctttttgccacTGTGAAGAGATCAGGTTCAAAgcactgttatttttttaaatcatttattctgAAACTATGTATATTCTACAGGGTTTGCTTTAACATCATTTCTGCTGGTGATATCAAAGAATTTTGTCTCATGCATTTATTAAAGATGTTTTGGTacatttttgtgaaagtgctggATAGGGTTTCATTTGCAAAACTCTTATGTTCAAAATCTGACCTTGAATATAACATTTCAGATGTTGTAGAACTTTTTTATAACTAatgaaaaaatgctgaaatgtatATAGATTGATGTgtgtagagagaaagaaatggggTCAATTTAAAGGCAAAATCTGTCGAAGGACTAGTAAAGCTGGATAAAGCACAACTTTTAATCTCCTCCTAATGattcagccaagaacagtaTTAGCTTTTAAAACTCATGAAGGACGAGGAGGCTCATCTAATATATTCTGTTAGTCTCTTTTCATCCATACATTAAAGTAATTGGTAATATGTtgtgttccagaaaaatgtgcATGACAGTATTATGTAATcttttattactttgtttatcAGTTTGTGAAAAATAAGccacagacaaaaacatatAAAGGTGAAAGATTGACAGGAAAGAGGTTTTCACATTCAGGAAATGAGATATTAAAACCTGT

Function

symbol description
mtnr1bb Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within rhythmic process and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in caudal tuberal nucleus; dorsal caudal thalamic nucleus; periventricular grey zone; periventricular nucleus; and periventricular nucleus of caudal tuberculum. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human MTNR1B (melatonin receptor 1B).

NR:

description
PREDICTED: melatonin receptor type 1B-B-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0048511 rhythmic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008502 melatonin receptor activity molecular_function

KEGG:

id description
K04286 MTNR1B; melatonin receptor type 1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312728.1 True 2199 mRNA 0.44 3 11234559 11245766

Neighbor

gene id symbol gene type direction distance location
LOC113543473 LOC108276550 coding upstream 15511 11167137 ~ 11219048 (+)
kpna7 kpna7,LOC108277302,LOC108423764,LOC103041448,LOC107693907,LOC107720648,LOC107556882 coding upstream 78869 11152075 ~ 11155690 (+)
LOC113543610 LOC100304491,LOC108423765 coding upstream 82806 11147595 ~ 11151753 (+)
tmem135 tmem135,LOC107701128,LOC107718730,LOC107693910,LOC107720646 coding upstream 136219 11084029 ~ 11098340 (+)
cct8 cct8,LOC107693911 coding upstream 150950 11074655 ~ 11083609 (+)
si:ch1073-15f19.2 LOC108277381 coding downstream 47931 11293697 ~ 11304416 (+)
LOC113543445 LOC108277350 coding downstream 62215 11307981 ~ 11314013 (+)
timm10b timm10b,LOC102781678 coding downstream 68828 11314594 ~ 11316563 (+)
ilk ilk,LOC107718724,LOC107720653 coding downstream 74311 11320077 ~ 11337679 (+)
LOC113543443 nhlrc3,LOC108276604,LOC107671632 coding downstream 92085 11337851 ~ 11345580 (+)
G267103 NA non-coding upstream 122962 11111386 ~ 11111597 (+)
G267090 NA non-coding upstream 146696 11086248 ~ 11087863 (+)
G267070 NA non-coding upstream 177538 11056612 ~ 11057021 (+)
G267062 NA non-coding upstream 192169 11042217 ~ 11042390 (+)
G267051 NA non-coding upstream 198329 11035998 ~ 11036230 (+)
G267257 NA non-coding downstream 186893 11432659 ~ 11432862 (+)
G267314 dyrk1a non-coding downstream 378608 11624374 ~ 11627972 (+)
G267317 NA non-coding downstream 404663 11650429 ~ 11652188 (+)
G267362 NA non-coding downstream 582803 11828569 ~ 11828818 (+)
G267381 NA non-coding downstream 618121 11863887 ~ 11868663 (+)
scaf4a scaf4,LOC107555128 other upstream 352294 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 663854 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 1471862 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 1809704 9419665 ~ 9424855 (+)
G266161 NA other upstream 1898269 9335801 ~ 9336290 (+)
vps36 vps36,LOC107701118 other downstream 3516547 14762313 ~ 14771073 (+)
trnar-ccu_11 NA other downstream 5841902 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 5841982 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 5842683 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 5842763 17088529 ~ 17088600 (+)

Expression


Co-expression Network