foxo1b (LOC108277356)


Basic Information

Item Value
gene id foxo1b
gene name LOC108277356
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1052951 ~ 1081289 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312743.1
GAGTGAGCTGTTGAAGGGACAGTTAGTCGTTTGttgttttccttctctctgaGTGCAGCAGTGGTAGTTGGTATGCAAATGAGATCCACGCTTGGGTACCTTATGAATGCGCGGATGTGATTGGTTAGCTGCTGGCTGTCAGTCAACCGTAGTGGGCGTGTCCGGTGCGCGGTGTTTAGGTgcattagTGATGGCCGAGGCGGCGCAGCAGCTCCAGCCGCTGGACTCAGACCCGGATTTCGAGCCTTTTTGCCGGCCGCGATCATGCACCTGGCCGCTGCCCAGACCCGAGTCCTCTACGGCGGCTTCGGGAGCGGAAGCAGAGCCGCGGGACCTGGACTTCATGGGCGGTTTGAGCTTGGCTTTGCtggaggagacagagacagagacggagGACAGGAAAGCGCACGGGTTTCGGTGCGATGAGGcgcggcagcagcagcagcagcagcatccgGCTCTGCCGGCCGCTCAGGTGCAACAGGTGCCGCAGCATCACCAGGTGCAGGTGCAGGTGCAGCCActttcatcctcttcatcctctacctcctcatcctcatcctccacaTCCTCGTCGTCGTCGTCGTCCGCGCAGAGGAAGAGCAGCTCGTGCCGGAGGAACGCCTGGGGCAACATGTCGTACGCGGACCTGATCACGCAGGCGATCGAGAGCTCACCGGAGAGACGCCTCACCCTGGCGCAGATCTACGAGTGGATGGTGAAGAGCGTCCCGTACTTCAAGGACAAGGGAGACAGCAACAGCTCAGCCGGCTggaagaactcGATCCGTCACAATCTGTCTCTGCACAGCCGCTTCGTGCGCGTACAGAACGAGGGCACGGGGAAGAGCTCGTGGTGGATGCTGAACCCCGAAGGAGGAAAGAGCGGTAAATCCCCGCGCCGCAGAGCCGCCTCCATGGACAACAACAGCAAGTTCACCAAGAGCCGCGGCCGAGCCGCTAAGAAGAAGGTTGGCCTGGACGGCGGCACGAACAGTCCCGGTTACTCGAAGTGGCTCGGCAGTCCTAACTCTCACAGTAACGATGATTTTGAAGCGTGGGGAAGTTTCCGGACGCGGGCCAGCTCGGACGCGAGCACGCTGAGCGGCCGGCGCTCACTTCCTACCCCTGAGGAGGACGTTAGCGAGGGAGGAGAACTCCACCTCGGATACCAGGCCACTAAATTAGCCTCCAAACTGCCGAGTCTGTCCGAGGTGACCGGCTCTTTCGGCTCCAAGAACCTGATGATGGAGAACCTGTTAGATAATCTGAACCTGCTTTCGCCCAAGAGCAGCTCAGACGCTCCGAGCGCTCAGTACGCTCCCTACAGCGCAGGCCAGGACTTCCACAAGTGGCAGAGCGGCGTGAGCATTAACGCTATGACCATCCAGACTCTGTCGGACAGCAAGGTGGCGGGTTATAACCCCTACATAGGGCAGTTTAATTGCCCTACTGGGCTTTTAAAGGAACTCCTGAGTAACGACGGCGAGCCCAGAGGAGACGTTCTGCCCCCCATGGAGGCAGCAGGGCCGCAAGGAGGGAGAGTCTTACCTCCCTATAATGCTCAAGGGCACATGGGGCAAGCAGGAAAAGCGataggctcacacacacacgctcacacacacgctcacacacacacctctacagcaGTGGGCATGAACAGGTGTGCCCTCCTGCCTCAGGGACATCTCGGTCGTCATGGCAACATGAAGCCATACCCTCACCTGGCGCAcatgggaggaggaggaggaggaggaggagctatCGATTCGGCGCCGCCCAGTTACTGCATCGTCAACAGCAACGGTTTCCACAGACACCCTCCGGTCCTGcagcatcatcaccaccatcaccatcacaaCCACCTGGAGCGGTTGCCTAGCGACCTGGACGACATGGCGATCGAGCGGCTGGAGTGTGACGTGGAGAGAGTGCTGCACGACACGCTGATGGACGGAGACGCGCTCGACTTCAACTTCGACCCGGCCGCCAGCCAGCAGGGCTTCACACACACCGCTGTcaagagcaacacacacagctgggtgTCGGGGGATCAGAAGGCACTTGCACCAGTTGATATAACTGTTCTCCATGACAGACTGCACCCGTTTATTTACCCCGTGTGAAGATTCGGATTATATTCGGACTTTCGTTTAAAACCTAAATACAGAAGATGCATCGTTTCCTGTTGCTGATGTTACGGATTTTAAAAGTGTCACATTCGGCAGTTACGAAGCACCGCAAATTCTCCACAGCTCTTATTTTAACTCTTTTCAACCTGTAACagaagaaacacatttttcttctgcgATTTAACGTATGTCTGATTGAAACTGCATATTTGTGTGGGCGggacttttgtttt

Function

NR:

description
PREDICTED: forkhead box protein O1-B

GO:

id name namespace
GO:0032873 negative regulation of stress-activated MAPK cascade biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0009888 tissue development biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0001568 blood vessel development biological_process
GO:0007389 pattern specification process biological_process
GO:0009790 embryo development biological_process
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09408 FOXO3; forkhead box protein O3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312743.1 True 2364 mRNA 0.57 7 1052951 1081289

Neighbor

gene id symbol gene type direction distance location
LOC113524167 thap12 coding downstream 46748 999241 ~ 1006203 (-)
si:dkey-250d21.1 LOC108276748,LOC108442106 coding downstream 56156 987090 ~ 996795 (-)
wnt11 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107751408,LOC107747044 coding downstream 92137 940503 ~ 960814 (-)
map6a map6 coding downstream 291880 745853 ~ 761071 (-)
zbtb21 zbtb21 coding downstream 326569 721125 ~ 726382 (-)
ap4m1 ap4m1,LOC107702797,LOC107720677,LOC107554303,LOC107742404 coding upstream 580 1081869 ~ 1090531 (-)
trnat-agu_11 NA coding upstream 14312 1095601 ~ 1095674 (-)
trnas-gcu_6 NA coding upstream 16509 1097798 ~ 1097879 (-)
LOC113524202 NA coding upstream 16888 1098177 ~ 1098309 (-)
tmem88a tmem88,LOC108276534,LOC106608829,LOC106525123 coding upstream 47290 1128579 ~ 1134162 (-)
G261686 NA non-coding downstream 54650 997641 ~ 998301 (-)
G261355 NA non-coding downstream 177174 657927 ~ 875777 (-)
LOC113524153 NA non-coding upstream 151074 1232363 ~ 1235521 (-)
G261748 NA non-coding upstream 241891 1323180 ~ 1323407 (-)
G261753 NA non-coding upstream 247282 1328571 ~ 1328776 (-)
G261758 NA non-coding upstream 253451 1334740 ~ 1334940 (-)
G261759 NA non-coding upstream 278850 1360139 ~ 1360361 (-)
LOC117599327 NA other downstream 20416 981406 ~ 1032535 (-)
si:ch211-266i6.3 LOC108276750 other downstream 38662 1006914 ~ 1014289 (-)
fhl1b fhl1b,LOC108444522,LOC107718794,LOC107701105,LOC107693928,LOC107548848 other downstream 736626 301010 ~ 316325 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other upstream 184163 1265452 ~ 1410939 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other upstream 694272 1775561 ~ 1780407 (-)
si:ch73-1a9.3 NA other upstream 1598386 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other upstream 1631153 2712442 ~ 2724473 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 1884366 2965655 ~ 2968182 (-)

Expression


Co-expression Network