LOC113538163 (LOC108276802)


Basic Information

Item Value
gene id LOC113538163
gene name LOC108276802
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 226364 ~ 245418 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312780.1
CCGCGCACTCGTCCCTACACAGTGCTGGTCCCGCAGGCTGGAGTGAGCAGCACGCGGCGCAGTTTAACGGCATTTTGCTGCGCGGCTGCGACACAGAAACGTCAGAATGTGACTCAGAGCCACCACAGGCAGCACGCGCACACCGCAGGGCCCCTAACGAGGCGAACTGTTTAGTCTGTCAGCAGGCGGATTGGGACGCAGCCGCCGCCTCACAGAGTCCCGCAGAGAAACTGATGGAAGGAGGCAAGTTGTGAGGAAAAGAGACAGGAGGGATTTAATGTCCTCTTGAAAAAgggtaaatttatttaaaatggcgGAGTCCGGTCCGTTTAGAGGCCTGCCCCGGATCCGGAGGGCTGCGGCCTCAATTCCTGGAAATCTGCACCTGGTTCTGGTTCTGAGGCCCAAAGCTCAGTCTCAAGGCACCGGCACAGACCTGGGCTTCCGCTTCTGTCAGGACGACTTCACTATTAAAATGCCTgtgatCATGCTGAGTTCAGTCACTGATCTTCTGCGTTATATTGATGAGAACCAGTTGAGTGCTGATTTCAGTGGAACTCTGGAGTGCAGCTCCACAGACTGGATCGTCCTGAGGACGGCGATAGAGAGTTTTGCGGTGATGGTGAAGGACGTCGCTCAGCTGCTGCAGGTGTTTGGAACCGAACTGGCTGAGACTGAACTGCCCGAGGAACCGAACGCCATCGAGTACCTGCTCCGCTCGCACACCGACAAATACAGACAGATGAAGGATGATATTCGCTCGGTGATGAAGGAGGGACGTCAGATCCTGTCTAATCTGGAAGGAGCTAagaggacagaggacagagacATCGCTCAGGACAGGGACACTGTACAGAGgctcCTGACCCAGCTCAGGGACATGGAGATGGCGTTTGACGGGTTTTTTGAGAAGCATCACCTGAAAATGCAGCAGTATCTGCAGCTGCTCCGTTACGAGCAGAGCTTTCACGAGACGGAGGTGAAGCTGGaagatctgattggtcgagagAAAGCGATTCCTGCTGCGGGAGTGACGGCGGCTCAGACGAAACAACTCATCACCGAACTACACACTCTGGACTCCATCGCTGAGgaggagaTGGGCCAGGCTCAGATCGTCATCCTTCACGGTCATCAGTTAGCGGCGAGTCATCACTACGCTCTGGCTCTCATCGTCCAGCGCTGTAACGAGCTTCGTCATCACTGTGACACACTGACCACTGCCCTGCGCAACAaacacacctcactcacacacacacacactctgcagctGCACCTCGaggaggcggtGCGTTGGTGTGATGAGAGTGTGTATCTGTTGGCTGGTCAGATGGTGGATAAGTTCCAGTCGAAAGAAGGAGCTCAGGAAGCTCTGAATGACATCGAGAGACTGCTGGAGTCCAAACCAACACTCAGCTacattactgacacacacacacctgagatacaggctcaGGTGACAGCAGTGATGGAGAAGTTCTCCTCAGTGCAGGTGATGCTGGAGAACAGACAGGCATGTTTGCGTAAACTCACCTGTGTTCAGGTGAGACCCATCCAGCCCGTGTCCCCGAGACCCGAGAGCCCGACCCGCCTCAAATCCCCGCTGTTCTCCCCCAAACACAGTTTTGATGTGAACTCCAGTCTGAAGTTCTCCTTTGATCTCTCTCTCCCGGGAAAAAGAACCGCACGCAAGAACAACTGCAGCAAGAAGattgaGGTGATGCACAAGGAGAGTCATGGTGGTGTGTGTCAAGAAGCAGAGGGAGCAGAGAACCCTGAACAGCATAGAtgtcaTGTGATGAAGGAGCTGATTGACACGGAGAAGGTTTATGTGGAGGAGCTGCTCAGTGTTCTACTGggttacaGAGCTGAGATGGATAACCCCGCTCTGTCTCACATCCTGCCATCGGAGCTGAAAGACAAGAAGGAGGTTTTATTTGGAAATCTGccagaaatatacaaatttcACAGcaggatatTTGTTCAGGATCTGGAGAGCTGCCGTGAGACTCCGGAGAGAGTGGGAGCAAGATTTCTAGAGAGAAAGGAGAATTTTCAGGTGTACGAGCGTTACTGCCAGAATAAACCTCGCTCGGAGGcgatgtggaggcagtgtgcaGACTCTCCGTTCTTCCAGGAATGTAAGAGAAAACTGAAGCACAAGCTGGATTTGGACTCGTATTTACTGAAACCTGTTCAGCGTCTGACCAAATATCAGCTCCTGCTGAAGgagctgtTGAAGCACAGTACACAATCGCAGTATGTGTGTGAACTCCAGGGGGCGCTAAACGCCATGCTGGACCTCCTCAAATCTGTTAACGACTCCATGCACCAGATTGCCATCACTGGAtacgagGGGGACCTGTGTGACCTACACGGCATtgAACACACACGGGCCCActggctcacacacactcacagcttcaAACACTGCCTCAGGATGAGTGCTGTGGGTGTCACTGAGAACATTAAAGGAGATGTGAAGAAGTTTGAGATCTGGTACAGTGGGAGAGAAGAAGTGTACGTAGTGCAGgctccAACAGTTGAGGTGAAGTCAGCGTGGCTCAGTGAGATCAGAAAAATCCTCACAAACCATCAGAAAACTGGTCAagatGAAGGTCTTGGTGCTgtagactctctctctcctcttctggTGAACAGtatgGAGAGGGTGTCAGTCTGCATGCCCTGGAGCCCCGCCCCCATCACAGGCTGCTCAGGTTGTTTTGATGTCCCTCCTCACAGTAAGGGGGCGCCGGTGCACTCGGACGAGTCAGGGAGCTCCAGTCCGGTTCTGACAGACCCTGTGATGTTCTCACCTCGACCCCAGAACCGCAACCGCCGCAGTTGGCCAGGAACCTCAAACTCCGTGGATATCTGTGAGACTTTAGAGGACTGGACCACTGACCTGTCCTTCATCTCCGACTCGGATGAAGAAGATGACGTCCTGCTGGTTCCTGGGAAGTACCGAGCGCTGGTGGATCACCTGAAGTGTGGTAAAGATGAGGTCATCATAAAACACGGTGATGTCATCCACCTACTGCAGGAGAACACCGAGGGCCTCTGGCACGTCAAAAACCTGACTCGTGGAGGTGAGGGAAAACTTCCAGCTGAGGCCTTGCACAGAATTCTGGGAAATGTGGACAGAAGTCATGTGATCAGACCGGGAGGCTCAGGAAATATAAGCAGAGCGAAGAACACGCCGTGATGAGATCCTCCATGTTCAAGGAAACATCTACATTATgatccagcacacacacatacacacacacacacacacacacacacacacatacacacacacacacacacagaacatccAGCCAAAAACAGTACCGTATTTTCTGGACTATAGGTcgtggagtgtgtgttaaagtgaggtgtgtgtgtgtgtcactgtgacgTGCTCGTGTATTAGTGTGTTTACGGTAGTTGAGATACTCCAGCAGTTACGGTGCATGCAGGATCATacagggttgtgtgtgtgtgtgtgtgtgtgtgaactgcaGGTGAATAAATTTTGGAACTCTGTGTTAGGTAAAGAATTCACCTGTAGCTGTTGCAGTAAATAGCGTTTGCACTCCGTCTCGTTGCTCCTGCATGAGGCGCTCTGTGTGTTTGGGACGAATCTTTAgatgaattatattataaaatatttcaggtgTTTTGTGAACAGGGTAAGAGTTGTTCCGAGGTTAACAGACCAAaatctaaattatttaaatctaaataagaGGAAAGCGGAGACTCGTATACTCCAGAAAATACGGTAAGCAAAGGATGCGATTcgttttctcttcctttccacTGTTCTTCACTTTCCTGCATCACTGAACATTTCTGACTTTATAGAGCACAACCTCGAAACACAGTCCTCACCGTTCCCATCACCGCAGTGCGTCACAACATCAGACGTGTGTTTACGGGAGATTTCTGCTCTCAGGATCGTCATGAGAACTTTATTCTGAAGGTAACAGGAGAACAAAACTCAGCCTTTAGCAACAGAATCCCATCAGCCTCAGCGTAAAGTGAGCCGTGTGCTAAATAACGCTAGCTCGTGGATTAGCATGTGCACTGTCATGCTAATTTGTGGTGTGGGATTTTTCCTCTAATGCTAGTTCTTCACTTTCTCTAGAGATttacaaacagatttaaactaaattttaataaattctgATCAGACTTTGTACGTTCCACACCTTTCCCCTTCAGTTTAAAACGAACATGACGCTCCTGCCTGCTGTTCACGTGTTTAAACATGATTACTCATGTTTACTTCCAGGAAGTGTGAGCTTCTCTACAGGATGTGACGGAATGAAGCGTGTAGAAACACTCACCGGTTTTAGGATCTACTTCGTGCCAAACTGTGACgtcacacatttttacacacggCGCTTTGTTTCTAATCCTTTTGTATACTTTGGTAGTGTTTTCATAGCATCGTGGATTTATTACAGTTAGTTTAATGTGTTAGTTTAATGCTtcactgtttacacacacacacacacacacacacaaagcagtgtTAAGGAATATTTCAGAGCCTTTAGTCTTCCTCGCCGGTGTGCGCTAAGCTAGCTTTGCTAGGAGCTTTGGTAACTCCGCTGCTCAGGCGGTTATGAAGGTGTGTTTTATAGCTGAAAGAATGAAGCCATAAATGTCACTAAGGAGCTTGAGGTGTGTGAAGGTACGTGTGCCGGAGAAGGTGTAGTGTTTagtctataaaatattttaactacATGTTTAAGCACAAGATGTATAATGctataaaaaaaagccattttcttCCTCAGTGCAGTGTCTTGAATGTAAATATGCGCTGTTTATTATCTCATTGTGCCAAACTGAATGTactcatgtttcatttttatgcttCACTGttaagaaaaagcaaaaacacacatccaGCTGCTGTACGCTGCTCACTGAGTGTAGTTAATTATTTACTCATTAGCTAATGCCTGCTGCTAATCAACTGCTTTATGAACACTGACGGCTCTAAGGCTAAATGAACCACTGATTTCACCATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312780.1 True 5031 mRNA 0.49 28 226364 245418

Neighbor

gene id symbol gene type direction distance location
znhit2 znhit2 coding upstream 156976 66588 ~ 69388 (+)
mrpl49 mrpl49,LOC107580894 coding upstream 160074 63779 ~ 66290 (+)
il2rga LOC108276805 coding downstream 96253 341671 ~ 351928 (+)
LOC113523717 c2cd2 coding downstream 214844 460262 ~ 476591 (+)
tbl2 tbl2,LOC107734476,LOC107691705,LOC107686137,LOC107728824 coding downstream 255804 501222 ~ 507099 (+)
cux1a LOC108276869,LOC106568027 coding downstream 330665 576083 ~ 612550 (+)
kctd7 kctd7,LOC106603469 coding downstream 370412 615830 ~ 621347 (+)
G261064 NA non-coding upstream 3602 221220 ~ 222762 (+)
G261048 NA non-coding upstream 41895 183986 ~ 184469 (+)
G261034 NA non-coding upstream 81497 144401 ~ 144867 (+)
G261031 NA non-coding upstream 84821 139290 ~ 141543 (+)
G261020 NA non-coding upstream 88752 132557 ~ 137612 (+)
G261068 htatsf1,LOC108444522 non-coding downstream 39830 285248 ~ 310549 (+)
G261067 NA non-coding downstream 62666 308084 ~ 308719 (+)
G261090 NA non-coding downstream 81844 327262 ~ 327468 (+)
G261099 NA non-coding downstream 173271 418689 ~ 422040 (+)
G261106 NA non-coding downstream 177453 422871 ~ 423758 (+)
wdr74 wdr74,LOC107548868 other upstream 121575 97689 ~ 104789 (+)
fgf13b fgf13b,fgf13,fgf13a,LOC108276808,LOC105907432,LOC107693932,LOC107720625,LOC107548853,LOC107084161,LOC107560535 other downstream 9528 254946 ~ 266773 (+)
LOC117599405 NA other downstream 66058 311476 ~ 311986 (+)
ska2 ska2,LOC108276801 other downstream 133602 379020 ~ 436298 (+)
G261104 NA other downstream 199349 444767 ~ 480711 (+)
prdm15 prdm15,LOC107578663,LOC108413920,LOC106512200,LOC106511912,LOC107728867,LOC107686138 other downstream 236970 482388 ~ 500186 (+)

Expression


Co-expression Network