tmed2 (tmed2,LOC108425203)


Basic Information

Item Value
gene id tmed2
gene name tmed2,LOC108425203
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7108507 ~ 7113994 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312805.1
TTTGGACCTCAGCGCGACCCGTCATAAGCTTTACGTGGCAGTACCACTAAAGCTTTCGGTTCAACTCAAAAATAGCCTCGACTCTCTCCACATTCCGTCTCTGCTCATGGAAAGAGAGTCTGTGGACTCttaatggtggtggtggtggcttTCTTAGCGTTTAGTAACTTCAGTTTGAAGCGAGAATGTTGACGTTTTCGGAGCTCGTCGTCCTGCTCGGGGTTTTGTGCGCTACAGCGAGCGGCTACTTCGTTAGCATAGATGCTCACGCGGAAGAGTGCTTCTTCGAGCGCGTGAACTCGGGCACTAAGATGAGCCTCATGTTCGAAGTAGCCGAAGGAGGTTTTCTGGACATCGACGTTGAGATAACTGGACCAGATGGAAAGCAGATTTATAAAGGAGACCGTGAATCCAGTGGGAAGTACTCTGTGGCCGCCCATATGGACGGCACTTATAAATTTTGCTTCAGCAACAAGATGTCCACCATGACTCCCAAAATTGTCATGTTCACCATCGACATCGGTGAAGCTCCCAAAGGCCAAGACATGGAGACAGAGGGCGGTGGTGACAGCTGGGATGCTCACCAGAACAAGCTAGAAGAGATGATCAACGAATTGGCCGTGGCCATGACAGCCGTCAAGCATGAACAGGAGTACATGGAGGTCCGGGAAAGAATACACAGAGCAATTAATGACAACACCAACAGCAGAGTGGTGCTGTGGTCATTCTTCGAAGCCCTGGTGCTCGTTGCCATGACCCTTGGACAGATTTACTACCTGAAGAGATTTTTCGAAGTACGACGagtcgtaaaaaaaaaaaaaaaaaaaaaaaacccacgcTTCCTCTCTACTATCAAGACAGTCATTCACTACTCCAAGGATTGGCTATCCTGCCTCAACACCTTTCAGAAGAGTACTTCAGTTTCCATTATTGTCTTTActtctgtgtttgtttagatTTCATTTAGTTCATTTGGGGAGCTATGGTCTTTCAGGCAAATCTTTGGTgttcacttttaattttttttaaccccagtTCTTActaatctgttttattttgtggaaCTTGTTTCTTTTTGCTTCTTGTCTAGTTTAATCTACTTAATggacaaacagtgaaataaagagGGTGTATTGGCTGTTGCTTAGAGAACGCTACAAGCATTGCATGGTGTATATTTCATGATACTGTAGAATGTTTTAATTGTCCTCAAAAAGAATGATTTGGTTGTTAACTTGAAATGAAAACGAAAGTGGTCTGGGAATTGACTTTTGATGCACACCCTTCGTAGGCTTTTCAGCTTCTTTAACTTATATGGCACATAATTAACGTGTATTAGCCAACCTATGGAATATGACTGTTTACGTATTAAAATGgctttattgtattttcagtcatttaagtataatttccattttgcagggtttttttctgttaactGGGGAAGGGAGTAATTTATGTACTTTTTTACTGTTACATGTCTGTATGGACATTTAATTCTTTAACATTTGCTATACAGAAAGAAAATTGGCCATGACTACTGCAGAACTGATGGTAAAACTGTACAATATTGTAAAGTAGGATGTTCAAGTGAATCAAATATGTACttgatttaataaaacatgatgttcTTTGAAAATCTCA
>XM_034312806.1
CCTCAGCGCGACCCGTCATAAGCTTTACGTGGCAGTACCACTAAAGCTTTCGGTTCAACTCAAAAATAGCCTCGACTCTCTCCACATTCCGTCTCTGCTCATGGAAAGAGAGTCTGTGGACTCttaatggtggtggtggtggcttTCTTAGCGTTTAGTAACTTCAGTTTGAAGCGAGAATGTTGACGTTTTCGGAGCTCGTCGTCCTGCTCGGGGTTTTGTGCGCTACAGCGAGCGGCTACTTCGTTAGCATAGATGCTCACGCGGAAGAGTGCTTCTTCGAGCGCGTGAACTCGGGCACTAAGATGAGCCTCATGTTCGAAGTAGCCGAAGGAGGTTTTCTGGACATCGACGTTGAGATAACTGGACCAGATGGAAAGCAGATTTATAAAGGAGACCGTGAATCCAGTGGGAAGTACTCTGTGGCCGCCCATATGGACGGCACTTATAAATTTTGCTTCAGCAACAAGATGTCCACCATGACTCCCAAAATTGTCATGTTCACCATCGACATCGGTGAAGCTCCCAAAGGCCAAGACATGGAGACAGAGGCTCACCAGAACAAGCTAGAAGAGATGATCAACGAATTGGCCGTGGCCATGACAGCCGTCAAGCATGAACAGGAGTACATGGAGGTCCGGGAAAGAATACACAGAGCAATTAATGACAACACCAACAGCAGAGTGGTGCTGTGGTCATTCTTCGAAGCCCTGGTGCTCGTTGCCATGACCCTTGGACAGATTTACTACCTGAAGAGATTTTTCGAAGTACGACGagtcgtaaaaaaaaaaaaaaaaaaaaaaaacccacgcTTCCTCTCTACTATCAAGACAGTCATTCACTACTCCAAGGATTGGCTATCCTGCCTCAACACCTTTCAGAAGAGTACTTCAGTTTCCATTATTGTCTTTActtctgtgtttgtttagatTTCATTTAGTTCATTTGGGGAGCTATGGTCTTTCAGGCAAATCTTTGGTgttcacttttaattttttttaaccccagtTCTTActaatctgttttattttgtggaaCTTGTTTCTTTTTGCTTCTTGTCTAGTTTAATCTACTTAATggacaaacagtgaaataaagagGGTGTATTGGCTGTTGCTTAGAGAACGCTACAAGCATTGCATGGTGTATATTTCATGATACTGTAGAATGTTTTAATTGTCCTCAAAAAGAATGATTTGGTTGTTAACTTGAAATGAAAACGAAAGTGGTCTGGGAATTGACTTTTGATGCACACCCTTCGTAGGCTTTTCAGCTTCTTTAACTTATATGGCACATAATTAACGTGTATTAGCCAACCTATGGAATATGACTGTTTACGTATTAAAATGgctttattgtattttcagtcatttaagtataatttccattttgcagggtttttttctgttaactGGGGAAGGGAGTAATTTATGTACTTTTTTACTGTTACATGTCTGTATGGACATTTAATTCTTTAACATTTGCTATACAGAAAGAAAATTGGCCATGACTACTGCAGAACTGATGGTAAAACTGTACAATATTGTAAAGTAGGATGTTCAAGTGAATCAAATATGTACttgatttaataaaacatgatgttcTTTGAAAATCTCA

Function

symbol description
tmed2 Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human TMED2 (transmembrane p24 trafficking protein 2).

NR:

description
PREDICTED: transmembrane emp24 domain-containing protein 2 isoform X1

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K20347 TMED2, EMP24; p24 family protein beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312805.1 True 1644 mRNA 0.41 5 7108507 7113994
XM_034312806.1 False 1617 mRNA 0.41 4 7108513 7113994

Neighbor

gene id symbol gene type direction distance location
plk2a LOC108277216,LOC108425197,LOC107653495,LOC107602251,LOC107709193,LOC107588929,LOC107706772 coding upstream 406686 6697674 ~ 6701821 (+)
LOC113544738 LOC108277217,LOC108425195 coding upstream 412838 6687467 ~ 6695669 (+)
LOC113544721 pde4d,LOC108276982,LOC108425192,LOC107704165,LOC107709115,LOC107653658,LOC108443004,LOC102789696 coding upstream 456655 6469950 ~ 6651852 (+)
depdc1b depdc1b,LOC107654254,LOC107704111,LOC107709206,LOC107602227 coding upstream 649545 6447459 ~ 6458962 (+)
elovl7b LOC108277391,LOC108425137,LOC107588931,LOC107706775,LOC107704168,LOC106571348 coding upstream 661317 6444254 ~ 6447190 (+)
naa25 naa25 coding downstream 13757 7127751 ~ 7152305 (+)
tor4aa tor4a coding downstream 55254 7169248 ~ 7174553 (+)
slc25a1b slc25a1,slc25a1b,LOC108425209,LOC107704153,LOC107706761 coding downstream 68954 7182948 ~ 7197818 (+)
pi4kaa pi4ka,pi4kaa,LOC108425210,LOC107751806,LOC107704152 coding downstream 85054 7199048 ~ 7243280 (+)
ube2l3a ube2l3,ube2l3a,ube2l3b,ub2l3,LOC106562742,LOC105014760,LOC105911915,LOC107599129 coding downstream 153507 7267501 ~ 7270847 (+)
G264944 NA non-coding upstream 17545 7089667 ~ 7090962 (+)
G264938 NA non-coding upstream 52848 7055347 ~ 7055659 (+)
G264936 NA non-coding upstream 54425 7053868 ~ 7054082 (+)
G264934 NA non-coding upstream 56567 7051504 ~ 7051940 (+)
G264933 NA non-coding upstream 57145 7051057 ~ 7051362 (+)
G264972 NA non-coding downstream 38805 7152799 ~ 7153864 (+)
G264970 brap,LOC107602221,LOC107712082 non-coding downstream 40280 7154274 ~ 7157567 (+)
G264976 NA non-coding downstream 51134 7165128 ~ 7166073 (+)
G264986 NA non-coding downstream 134191 7248185 ~ 7249078 (+)
G265039 NA non-coding downstream 254495 7368489 ~ 7369482 (+)
G264948 NA other upstream 26066 7066871 ~ 7082441 (+)
LOC113544903 mphosph9 other upstream 913826 6169893 ~ 6194681 (+)
G264336 NA other upstream 1096605 6008800 ~ 6011902 (+)
triap1 triap1,LOC106568193 other upstream 2027864 5077853 ~ 5080643 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 3532370 3253316 ~ 3576137 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 2057 7116051 ~ 7126246 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 1061520 8175514 ~ 8187611 (+)
LOC113544929 NA other downstream 1215711 8329705 ~ 8353841 (+)
G265696 NA other downstream 1519641 8633635 ~ 8639728 (+)
G265807 LOC107756568 other downstream 1554820 8668814 ~ 8669797 (+)

Expression


Co-expression Network