ppp2r2ab (ppp2r2a,ppp2r2ab,LOC108277296,LOC108427249,LOC107744137,LOC107720666,LOC107678035,LOC107687801)


Basic Information

Item Value
gene id ppp2r2ab
gene name ppp2r2a,ppp2r2ab,LOC108277296,LOC108427249,LOC107744137,LOC107720666,LOC107678035,LOC107687801
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 22272066 ~ 22289033 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312836.1
GCAGGGCATGTTCCCAAGCAAGATGCCGGCGCGTGTTGATGGCGTCACGGCCGGGCGGGGTTGCGCCATTTTGAATGTGGATAGTGGAGTGTGGGAGGAAAAGGCTGAAGGAGGAGTGTTGGACTGCTTCAGAGGGACTTCAGctggagaggtggagagaaaataaagcgGCTAGAACACATCCTCGATTTATTATCAAGcagggattttatttatttatttatttttttgcaataaCACAAACCAAGGGAAAGTTATCAGGAACCGCCGCTGAgattccctctccctctctctctctccctctctctcgccaTGGCAGGTGCCGGAGGCGGGGGCAACGACGTGCAGTGGTGCTTCTCGCAGGTCAAAGGAGCAATCGATGATGACGTAGCTGAAGCTGATATCATCTCCACCGTGGAATTCAACCACTCAGGGGAGCTGTTAGCCACTGGAGACAAAGGCGGACGCGTCGTCATCTTCCAGCAAGACACTGAGAACAAGGCGCAATGCCGCAGCGATTACAACGTTTACAGCACGTTCCAGAGCCACGAGCCCGAGTTCGACTACCTGAAGAGTCTGGAGATCGAGGAGAAGATCAACAAGATTCGCTGGCTGCCACAGAAAAACGCCGCACAGTTTCTGTTGTCCACAAACGACAAAACTATAAAGTTGTGGAAGATAAGTGAACGTGATAAGAGACCAGAGGGCTACAATCTAAAAGAGGAGGATGGACGCTGCAGAGATTCGACCACCATCACTACTCTACGGGTGCCCGTGTTCAGGCCCATGGACCTGATGGTGGAGGCGAGCCCTCGGCGTGTGTTCGCCAACGCTCACACTTACCACATCAACTCCATCTCGGTGAACAGCGACAACGAGACGTACCTGTCCGCCGACGACCTGCGCATTAACCTGTGGCACCTGGAGATCACCGACCGCAGCTTCAACATCGTGGACATCAAGCCGGCCAACATGGAGGAGCTGACGGAGGTGATCACGGCGGCCGAGTTCCACCCGCACCAGTGTAACACCTTCGTCTACAGCAGCAGCAAAGGCACCATCCGCATGTGTGACATGCGCGCCTCCGCCCTCTGCGACAAACACTCCAAACtgTTCGAGGAGCCAGAAGACCCCAGCAACCGCTCTTTCTTCTCAGAAATCATCTCTTCCATCTCGGACGTGAAGTTCAGCCACAGCGGCCGCTACATGATGACCCGAGATTATCTGTCCATCAAGATCTGGGACCTGAACATGGAGAATCGGCCAGTGGAGACGTATCAGGTTCATGAATACCTCAGGAGTAAGCTGTGCTCGCTCTACGAAAACGACTGCATCTTCGACAAGTTCGAGTGCTGCTGGAGCGGGAACGACAGCGTGGTGATGACGGGCTCATACAACAACTTCTTCCGCATGCTGGAGCGCACGCAGCGGCGAGACGTCACCCTGGAGGCGTGCCGTGAGAGCTGCAAGCCCCGGCAGGTGCTGAAGCCGCGGCGCGTGTGTGCCGGCGGGAAGAGGAAGAAGGACGAGATCAGCGTGGACAGCCTGGACTTCAACAAGAAGATCCTGCACACGGCCTGGCACCCGCACGCCAACATCATCGCCGTAGCCACCACCAACAACCTCTACATCTTCCAGGAGAAGGGCAACTAGGAGCGACCAACCTCGCACACCCCCCACACCTCCgtctgtgtgcgtgcgtgtgtgaggAGAAAAAGTTAAAGAGGAACTAGAGAAAATAGTTTTTGTGACAACCATCACCACTACTGTCATCATCTTTATCATCACGATCAGGACGGGGCGGGGCGGGGCAAACTGGCACCATCATGTTGTACCGAGTCAGCCGTGACACACGCCGTCCACTCTGTGTACCCACAATCCTCTCCTCTTACCCATCAGGCCTGGCTACAGGGCCACGTTGGCCACAGGTTCTGAAATGtcagtcattttgtttttgtcctttttttgtaCTTGTCGAAACCTTCGAACTAGGAATGTGCTGATGATCAGTTACGCAATACATTGcaatatttgcatatattattaacatgtaCCTTTCAAACATAAATGAGAAATTCCATAACTCTGTGCACCGGATGAGGATTCCAGCTGCCTCCGCAATACGATACTGtattgtaatataaatatttaatatcagcacatgcctaatTTGAATGAATGAGTCCCTGTATTCTTTACACCTCAGCTCTTTTTGTGccattaaagttttttttttaaatcttctcagTGAATTTGCCAAGTTGTTTAGGttgttttaattctgtttaaagaattttgtctttcttttgctCAATAAATTCTCCTCAATACTGTACTCAA

Function

symbol description
ppp2r2ab Predicted to enable protein phosphatase regulator activity. Acts upstream of or within blood vessel lumenization. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol. Orthologous to human PPP2R2A (protein phosphatase 2 regulatory subunit Balpha).
ppp2r2a Enables protein phosphatase regulator activity. Involved in protein dephosphorylation. Part of protein phosphatase type 2A complex.

NR:

description
serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform-like

GO:

id name namespace
GO:0010458 exit from mitosis biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0007165 signal transduction biological_process
GO:0000159 protein phosphatase type 2A complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312836.1 True 2340 mRNA 0.51 11 22272066 22289033

Neighbor

gene id symbol gene type direction distance location
LOC113543961 NA coding upstream 798948 21468412 ~ 21473118 (+)
LOC113523962 pla2g1b coding upstream 805923 21462543 ~ 21466143 (+)
LOC113544185 pla2g1b coding upstream 819993 21447235 ~ 21452073 (+)
prkab1a prkab1 coding upstream 826802 21435902 ~ 21445264 (+)
phf24 phf24 coding upstream 847219 21393821 ~ 21424847 (+)
bnip3lb bnip3lb,LOC108277095,LOC108427248,LOC103036208,LOC107687791,LOC107561399,LOC107678042 coding downstream 2048 22291081 ~ 22310553 (+)
dpysl2b dpysl2b,dpysl2,LOC108277094,LOC108427246,LOC107687778,LOC107678023,LOC107560521 coding downstream 26261 22315294 ~ 22351716 (+)
igsf9a LOC108277156 coding downstream 90887 22379920 ~ 22426821 (+)
vsig8a LOC108277295 coding downstream 417928 22706961 ~ 22766275 (+)
atp6v1b2 atp6v1b2,LOC108277294,LOC103034689,LOC108433525,LOC107687718,LOC107678016 coding downstream 478193 22767226 ~ 22780287 (+)
G273226 NA non-coding upstream 233917 22037839 ~ 22038149 (+)
G273258 NA non-coding upstream 289875 21981979 ~ 21982191 (+)
G273248 NA non-coding upstream 309199 21962664 ~ 21962867 (+)
G272940 NA non-coding upstream 779394 21479900 ~ 21492672 (+)
LOC113544190 NA non-coding upstream 779990 21488112 ~ 21492076 (+)
G273473 NA non-coding downstream 273071 22562104 ~ 22562325 (+)
G273600 NA non-coding downstream 512048 22801081 ~ 22840120 (+)
LOC117599377 NA non-coding downstream 703509 22992542 ~ 22994797 (+)
G273683 NA non-coding downstream 748376 23037409 ~ 23038616 (+)
G273644 NA non-coding downstream 758888 23047921 ~ 23062345 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other upstream 238069 21922551 ~ 22033997 (+)
LOC113543995 NA other upstream 793186 21476087 ~ 21478880 (+)
LOC113544125 LOC100304632 other upstream 910322 21359519 ~ 21361744 (+)
G272408 NA other upstream 1729112 20540325 ~ 20542954 (+)
G272374 NA other upstream 1842923 20423399 ~ 20429143 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 80223 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 333395 22622428 ~ 22665570 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 760779 23049812 ~ 23145567 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 955527 23244560 ~ 23274653 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other downstream 992528 23281561 ~ 23386107 (+)

Expression


Co-expression Network