exd3 (exd3)


Basic Information

Item Value
gene id exd3
gene name exd3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23873693 ~ 23935370 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312837.1
tgtacaggtgaggACGTGGCCGTGCTCAGAGAGCAGCTGTGTGACCTGTGGAGCAggaaggagctggaggagCTGAGATTACGGACCGCGTCCGGGTTCTCCCGGTTCCGCTCGCCCCTGGCCGGGCTTCTGATGCTGCTGGACGGCTGCCCGGGTGTCCAGAAGAGCAGATCCACCACGCTGGGTCAGTTCCTCCTCACCGAGTTTGTGCGATGGAGACGCGGCCAGGCTCGGGTCAGCGTGAAGGAGCTGAAGGACGAGGAGGAGAAGCGGAACCTGCAGCTCCAGGCTCTAGAGCTCATCACGGCCTCACAGCCAGGATACATGGACCTCCTGCTGGAGATCTACGAGctgaagaacctggagaagAACCTGCTGCTGGAGCACGTGGCCTTCCTGCAGAACAGCTGCTGCTTCAGAGAGGCGGCGTTGCTTGGCATGAAGTTAGGACTTCAGGAAGAACTCGACATGGAGCAAATGTGTGTTCCTCTGATCCTGATGGACAAGCTGCCCCTGGCCGAGGCGTACGTTCAGGATCACGCTGACCTGCAGGAGCGTCTGATCCGGCTGCTGGACTCGTGGTGCAGTCCAGACTTCAACCTGGAGGACGTGCGCAGGCAGTTTCCTTCTTTGTCCCTTTCCAAGCACCAAACAGACCAAATCCAGCCCAAGCTGCTCATTAGACACGTCTTCCGGCTCATGGAGAAATTCAGCATTGATCCtgGTTTGTGTGTGAACGCTGTCTACAAGAGGAAACTCGACTCCCTGAGGTTTCTCATGTACAAGAGGTTTGGAGAGAAGAACATGACGGAGGAGAACTGGAGGGATCACGTGCAGgtcaCAGTGGAGGGCAGTGTGGACCTCCAGGTCGTGTTAGTGGAGCTCTTAGTGAAACACAGTGGACTGAAAGCTGCGGCTCAATGGGCCAAACACTACAGTGTCCCGAGAGACAGACTTCCCATCGGGGTGTGGGACACCATGGAGACCCTCTCCTCCAGTCAGCTgGAGATAAATGAAGTGTGTTCTCCTCTGGACCTGTGGGTCACTCCTCCGTCTCACCAGCTCCAGTTCTACCAGCTTCCTCTGGACCAGCAGCGCGTCCACACGGTGGAGAACTCGGAGCAGCTGCAGCTCTGCAGAGACTCGGTTCTACAGGCGGGGCGTGTGGTGGGCGTGGACATGGAGTGGAGAGCCGGATTCGGAACGGTGAGCACGCAACGCATCTCGCTGATCCAGCTGGCCGTGAAGGAGCGAGTGTTCCTGTTGGATCTGTGTGCTCCGGGTCTCAGCCATCACAGCCTGACCGTCAACTTCATCCGAGCGCTGCTCACCGACACCAGCGTCCTCAAACTGGgttatgGGATGTCTGGAGATTTGAGGAGTCTGGTGGCCACATGGCCTGAGTTAAAGGAGGAACCTCTGGAGTTTAAGGGAGTGTTGGACCTGCTCCATGTCCATCAGCAGCTGCAGCGGTGCTGGCGAGGGAGAACCGGGCCGAGGCCCGTGGAGGTGAACGAGGGTCCAGCGGAGAAAGGGTTGAGTCTGCTGGTGCAGCAGGTGCTCGGAAAACCGCTGGATAAAACGGAACAGCTGTCCAACTGGGAACGCCGTCCACTTCGCACCGGACAGGTCCGCTATGCAGcgaTAGACGCGTACTGTCTGGTGGATGTGTATCTGACTCTCTCTGCGGATCCGAAGGCGTTCGGTCTTCCTGATGATCTGCTCTCTATCAAGCCGAGTCCATCGACCAAAAGTGACTCCGACAAAAAAGCTAAAGAGAAGAGGAAGCAGACGGGCCGGAGGGGTCGGCAGAGTGGCATCGGGCGGACGGGCGATCAGGACGAGTGCGTGAGGGGGAACGGCGAGCGACACGGAGCCTCCATAACGCCGCAGGAGCTGCGCGTGGTGTGTGACAACATGCTGCAGGGCCTGGGCCGGTACCTGCGCTGCGTCGGCGTCGACGTGCTGATGCTGGAGAACACGGACGACCACAAAGTAGCAGCGcagATCGCTCGAAACGAAGGTCGTATCATCCTCACTTCCGGTCAGCCATTTCaaactctccgGTCGCAGGTCGCAGAAGGCCGCTGTCTCACTCTGGACTGTTCGGAGAAGGCTCGGGACCAGGCTGTCCGCGTCCTTAAACATTTCAACGTCCACCTCACGCCATCGGACATATTCAGTCGGTgccagGCGTGCAATAATGACGAGTACCTGAAGCTGCCGAGAGAAGACATGACTCAGATGATGAACAAACGAGgcCTGATTCAGGACACGGTGCACAAACAGGACGACTGGGAGGCTCAGTGCGACGCTCAGGTGGACTGTAACAGGTCGAGGGCCCCGGGCGGGCCGGCGTTCACTCCTCACTGCCGCTGGGCCCCTCGCTCGGCCCTCGACGCTCACTCCTTCAGGTTCAGCGGCGGCGCCGAGGTGCAGCTGGAGACGGTTCCTCCCGGTCTGCTCCCTCGCATCCCCGAGTACTTCATCTGCACGCGCTGTGGGAAGGTGTTCTGGGAGGGAAGCCACTTCGACCGGGCGCTCGCTCAATTCCAGGACGTTCTCAACATTTCGGATGACGACACGACGGCCAGGAAGCACTGAGCGTTCCGAAGTTTGagggctgtaaaaaaaaaaaa

Function

symbol description
exd3 Predicted to enable 3'-5' exonuclease activity. Predicted to act upstream of or within nucleobase-containing compound metabolic process. Orthologous to human EXD3 (exonuclease 3'-5' domain containing 3).

NR:

description
exonuclease mut-7 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312837.1 True 2639 mRNA 0.59 18 23873693 23935370

Neighbor

gene id symbol gene type direction distance location
dbh dbh coding downstream 128160 23723727 ~ 23745533 (-)
strbp strbp,LOC107744073,LOC107686417 coding downstream 366191 23394533 ~ 23507502 (-)
morn5 morn5 coding downstream 710227 23150003 ~ 23163466 (-)
mrrf mrrf coding downstream 769035 23085312 ~ 23104658 (-)
LOC113544094 anxa3 coding downstream 803645 23061736 ~ 23070048 (-)
ak3 ak3,LOC107658667,LOC107685112,LOC107744244,LOC107713310 coding upstream 9005 23944375 ~ 23956050 (-)
ptbp3 ptbp3,LOC107658670,LOC107744247 coding upstream 105661 24041031 ~ 24095321 (-)
LOC113543977 NA coding upstream 182653 24118023 ~ 24193873 (-)
LOC117599328 LOC107690397,LOC107716059,LOC107572820 coding upstream 230007 24165377 ~ 24171214 (-)
lin54 lin54,LOC107744261 coding upstream 324338 24259708 ~ 24274253 (-)
G274370 NA non-coding downstream 5236 23868242 ~ 23868457 (-)
G274361 NA non-coding downstream 25129 23848360 ~ 23848564 (-)
G274318 ambp non-coding downstream 28217 23835055 ~ 23845476 (-)
G274321 NA non-coding downstream 33235 23839988 ~ 23840458 (-)
G274355 NA non-coding downstream 43934 23824093 ~ 23829759 (-)
G274383 NA non-coding upstream 3826 23939196 ~ 23942218 (-)
G274380 NA non-coding upstream 8042 23943412 ~ 24020906 (-)
G274386 NA non-coding upstream 46802 23982172 ~ 24015670 (-)
G274400 NA non-coding upstream 60593 23995963 ~ 24012459 (-)
LOC113544148 NA non-coding upstream 86417 24021787 ~ 24030494 (-)
nrarpa nrarp,nrarpa other downstream 10425 23859305 ~ 23863268 (-)
G274342 slc27a4 other downstream 71409 23798359 ~ 23802284 (-)
LOC113544130 rusc2 other downstream 2666523 21189969 ~ 21207170 (-)
drg1 drg1,LOC107744129,LOC107567440,LOC107713382,LOC107555524 other downstream 3092619 20772560 ~ 20781074 (-)
pmaip1 NA other downstream 3759234 20111448 ~ 20114459 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other upstream 316178 24251548 ~ 24253312 (-)
LOC113544170 plac8 other upstream 362106 24297476 ~ 24301032 (-)

Expression


Co-expression Network