ugcg (ugcg,LOC107571241,LOC107558686,LOC107713309,LOC107658668)


Basic Information

Item Value
gene id ugcg
gene name ugcg,LOC107571241,LOC107558686,LOC107713309,LOC107658668
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23971438 ~ 24011050 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312839.1
catacacacacacacactctcacacacacactctcacacacactctcacacacactctctcacacacacactctgcccgGTGGTGGCTGTGCACCATGGCCTTGCTGGAGCTCGCTATGCAAGGCTTCTCCATCTtcggatttattttatttattgttctctGGCTGATGCATTTCATGTCCATCATCTACGTCCGCTTGCATCTCAATAAGAAGAGCAGCGATAAGCAGCCGTACAGCAAACTGGCCGGAGTGTCGCTGCTCAAACCCCTGAAAGGCGTCGACCCGAATCTCGTCAGTAACCTCGAGACCTTCTTCGAGCTCGACTACCCGAAGtatgAAATTCTGCTCTGCGTGCAAGACCACGACGATCCGGCCATCGACGTGTGTAAAAAGCTGCTGGGGAAATACCCCAGCGTCGACGCCCGCTTATTTATAGGCGGTAAGAAGGTTGGCATCAATCCAAAGATAAACAACCTCATGCCAGGTTACGAGGGAGCGAAATACGACCTGGTGTGGATCTGCGACAGCGGCATTCGAGTGAGGCCCGACACGCTGAAGGACATGGCTAATCAGATGACCGAGAAGGTGGGTCTGGTTCACGGCCTCCCCTACGTCGCAGACCGGCAGGGATTCGCCGCTACGCTCGAGCAGGTGTATTTCGGAACGTCACACCCTCGCTCCTACATCTCGGCTAACGTGACGGGGATTAAGTGTGTGACGGGAATGTCGTGTCTGATGAGGAAGGACGTTCTGGACCAGGCGGGCGGTCTCATCGCGTTCGCTCAGTACATCGCTGAGGATTACTTCATGGCCAAAGCCATCGCTGACAGAGGATGGAAATTTTCCATGGCGACGCAGGTAGCCATGCAGAACTCCGGCTCGTATTCCATCGCTCAGTTCCAGTCACGCATGATCAGATGGGCGAAGCTGCGGATCAACATGCTCCCCGCCACCATCATCGAGCCCATCTCCGAGTGCTTCGTGGCGAGTCTGATCATCGGCTGGTCGGCGCATCACATGTTCCGCTGGGACATCATGGTGTTCTTCATGTGCCACTGTCTCGCCTGGTTCATCTCCGACTACATCCAGCTGCGAGGAGTTCAGGGCGGTCCGCCGTCGTTCTCCAAGCTGGACTACGCCGTGGCCTGGTTCATCCGCGAGTCCATGACCATCCAGATCTTCCTCTCGGCGCTCTGGGATCCCACCATCAGCTGGAGGACGGGACGCTACCGGCTACATGCGCTCTTGCGGCACACGCCGAGAAATACTggacgataa

Function

symbol description
ugcg Enables ceramide glucosyltransferase activity. Acts upstream of or within glycosphingolipid metabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in notochord; primary neurons; trigeminal placode; and yolk syncytial layer. Orthologous to human UGCG (UDP-glucose ceramide glucosyltransferase).

NR:

description
ceramide glucosyltransferase

GO:

id name namespace
GO:0006687 glycosphingolipid metabolic process biological_process
GO:0008120 ceramide glucosyltransferase activity molecular_function

KEGG:

id description
K00720 UGCG; ceramide glucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312839.1 True 1280 mRNA 0.56 9 23971438 24011050

Neighbor

gene id symbol gene type direction distance location
ambp ambp coding upstream 126043 23835167 ~ 23845395 (+)
ptgdsa lcn2 coding upstream 139913 23815676 ~ 23831525 (+)
slc27a4 slc27a4,LOC107658662,LOC107744240,LOC107685116,LOC107713315 coding upstream 161609 23789432 ~ 23809829 (+)
swi5 swi5 coding upstream 184655 23781356 ~ 23786783 (+)
fam163ba fam163b,LOC107595554,LOC107713289,LOC107685121,LOC107597608 coding upstream 194405 23755117 ~ 23777033 (+)
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding downstream 222710 24233760 ~ 24252068 (+)
cops4 cops4,csn4,LOC107685106,LOC107558694 coding downstream 265032 24276082 ~ 24296725 (+)
cwc27 cwc27,LOC107744252,LOC107713303 coding downstream 298981 24310031 ~ 24359123 (+)
ppwd1 ppwd1 coding downstream 445986 24457036 ~ 24465100 (+)
nln nln,LOC107743138 coding downstream 492813 24503863 ~ 24525223 (+)
G274239 NA non-coding upstream 24931 23945616 ~ 23946507 (+)
G274193 NA non-coding upstream 102241 23868854 ~ 23869197 (+)
G274192 NA non-coding upstream 110735 23859824 ~ 23860703 (+)
G274186 NA non-coding upstream 119220 23851997 ~ 23852218 (+)
G274161 NA non-coding upstream 294211 23675643 ~ 23677227 (+)
G274289 NA non-coding downstream 96598 24107648 ~ 24110738 (+)
G274431 NA non-coding downstream 113686 24124736 ~ 24125213 (+)
G274457 lin54 non-coding downstream 246857 24257907 ~ 24261576 (+)
G274583 NA non-coding downstream 391973 24403023 ~ 24491201 (+)
G274624 NA non-coding downstream 480365 24491415 ~ 24491856 (+)
cdc37l1 LOC108276758,LOC108433523 other upstream 31306 23937978 ~ 23940132 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 585331 23281561 ~ 23386107 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 696785 23244560 ~ 23274653 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other upstream 825871 23049812 ~ 23145567 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 1305868 22622428 ~ 22665570 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 92023 24103073 ~ 24112853 (+)
LOC117599389 NA other downstream 215104 24226154 ~ 24232819 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other downstream 469549 24480599 ~ 24498642 (+)
erbin erbin,erbb2ip other downstream 518928 24529978 ~ 24639642 (+)
zfand5b zfand5,LOC108277070,LOC108428885,LOC107742939,LOC107726558,LOC107705050,LOC107667265 other downstream 588812 24599862 ~ 24658701 (+)

Expression


Co-expression Network