lin54 (lin54,LOC107744261)


Basic Information

Item Value
gene id lin54
gene name lin54,LOC107744261
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24259708 ~ 24274253 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312863.1
GTGTGGGCGGGGCTATATTATGGGCTGTTAGAGGTGAAATGGCGCTCGGCGCGGTATTTTAAACAATCCGATTCGTTTCTGAAGCGAGCTGCGGAAAATGTCGCTGCGCCGAGTCGCAATCATCCGCGCATGAATGAAGCAAAAACAGCGTCCATCGTCCCAGAAATCGGCTGTGACAGAGATTTCGGCAAAGTtgacggagtgtgtgtgaaagcatgGACGTGGTGTCTCCTGAACTGAACAGCATCCTCCCTGATGAGATCATGGACACCGAGGCCATGGCCATGGAGGAGGACCCCCCTGCCGAGACGCCGGCTCCGTCCTCCCACTCGGCCGCCGAGCCGGCTCAGGTTCCCATGGAAACGGAGGTGCCCGAGATCGTCAGCTTGTGTCCCGCTACCGCGCCGACGCAGAAGACGGAAGCTCTGACCACCCTGACTGCGACGGACTCCACGCTGTGCGGCATCAGCGCCGGGACTCAGCTCGTCGTCACCTCTTCTTCCTCCGCTGGCCCCAAGATGGCCACCGGTACCGTCGCCGTGACCACCGCGCAGCCCGGCAGTCCCGTAGTGGGTCAGAGCGTCGCCAAGATCCCGGCCCCGTTCGCGCCCACCAGCCCGGCCAACCACCAGCTCATCATCAATAAAGTGGCGGCGGACGGCAAGTCTCCCGCCGCCGCAGTGCTCAAGCAGGAAGGGCAGAAGCTCCTGGTCACGGGTCTGAGTAAAACGGGGCAGCCGATCGTCCTGGCGCTGCCCAACACCTGGAGCAAACCGGCCACGTCTCAGGGCACAGGAACCGACGTGAAGACGCAGCCCACGCAGTTCAAAGTGGTTTCAGCAGGAACAAAGCCTGTGATTGGAGTACAGGCTGTgagctcagccaatcagctgctGGGATCCTCCTCTCCTCTACAGGCCCAGCAACTCAAaactgtacagATTACGAAAAAGACCCCGGTCTCCACAGCAGGGCCCATGATCACCAAGCTGATCATCACGAAGGCCCTGAACAACAAGGGCCTGACGAGCCAAGCCACCGTCACTCCTGTGGTCACAGGACGGGTTCTGACCCAGACTACACCAGTGACCCCTCCACGGACCATCACCATCGGAGAGACCATCAGCACGACGCCACAGTCGCTCTCCTCctccagcagcagcaacagcaaagTGGCCATTTCTCCTCTTAAATCTCCCAGCAAGGTAACCGTGGCCGCTCAGCCTCCTAACTCTCCCCAGAAACCCGTGGCCGTGCCTCTGAACGTGGCTCTGGGTCAGCAGATCCTCACCGTGCAGCAGGCGGCTTCTACTTCACCAGCTAAAGCAGGAAGCAGTCAGTCCACTGCCcagACAGTGAAGCCGGTGCAAACTGTGGCAGTGGGCGGAGTCAACACACCGCAGTTTAAGACCATCATCCCCTTGGCCACACCCCCAAACGTTCAGCAGATCCAGGTACCCGGCAGCCGCTTCCATTACGTACGCTTGGTCACGGCCACCACCGGGAACACGGCCCAGACGGCCAACGCCAGCACGACCACCAACCCCACCACCATCCAGCCTGCCAAGCCCATGATGATGAACACGGCTGCAGTGAGGATGTCCGTTCCCATCGTTCCAGCTCAGACGGTCAAGCAGGTGGTGCCGAAGCCGATGACATCAGCAGCTCAGGTGGTGAGCAGCAGTCAGACGCAGCAGCGGCTCATCATGCCGGCCGCGCCGCTCCCTCAGATCCAGCCCAACCTAACCAACCTGCCCCCGGGCACCGTGCTCGCTCCGGCTCCGGGCTCGGGGAACATGGGCTACGCCGTGCTGCCGGCCCAGTACGTcacacagCTCCAGCAGTCGACGTTTGTGACTTTGGCGAGCAGCTCGGGTTTCTCCGCCCCCAGCTCCATCCAGACCCAGGCCAGACTTCCTCTGAacggTTTATCTCCATCAGAGACGACGTCCAGACCACGAAAGCCTTGCAACTGCACCAAGTCACAGTGCCTCAAACTATATTGTGACTGCTTTGCAAACGGAGAATTTTGTAACAACTGCAACTGTGTTAATTGCTTCAACAACCTCGACCATGAGAGCGATCGCCTTAAAGCCATTAAGGCTTGTTTGGACAGAAACCCGGTGGCCTTCAAGCCTAAGATCGGTAAAGGGAAAGAAGGAGAATCGGAGAGGAGACACAGTAAAGGCTGCAACTGTAAGAAGTCGGGgtgtttaaaaaattactgcGAGTGTTATGAGGCGAAGATCATGTGCTCGTCGATCTGTAAGTGTGTGGGCTGTAAGAACTTCGAGGAGAGTCCTGAGAGGAAGACTCTGATGCACTTGGCCGATGCGGCGGAGGTGCGAGTGCAGCAGCAGACTGCAGCTAAAACCAAACTGTCCTCTCAGATCTCAGACCTGCTGACCAGAACCACACCGGCCATCAGCAGCGGGGGGAAGTTGCCGTACACGTTCGTGACGAAGGAGGTTGCCGAGGCGACGTGTGACTGTCTCCTGGAGCAGGCGAGGAAGGCGGAGCGTTATAACCAGCCTCAGACGGTGGCAGAGAGACTGATCCTGGAGGAGTTTGGTCACTGTCTGCGCAGAATCATCAGCTCTGCTGCTAAAGCCAAGACGGACTGCTCCATCAACTGCTAGAGCTGCGCTGCGCTTCTGCGAACTGATCCTGGATCAGACATCCTGGAACACACTCTGGCCTGTCAGCGGGATTTCCGGGTCGGAGCTCGTGCTTTTGTACAGAGCGAGACTTCTGTTAGCTGATCGTAcacaagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagctaaAGTGGACACAAAGAGACGAACTTTATAAGATGAGAACTGCAATGGCTGCCAGCTTCATCTGCATCActctggcgtgtgtgtgtgtgtgtgtgtgtgttgtacaggtcACTTGTGTAGAGGGGAATTGATTTTAGAGTCATTTTTATGCTTGTTAGCCTTCTCATTTTAAACTCAcaatcatatgtgcttttttccatttgtttttttttcgttttctctctttcccaaCAAGGCTTTCATTCTGTGCCGTTGTTTTGCCGTCTCGTCTTGCTGTTTATTTACCGCTAATAACCTCAGCTCAATAATCATGACTTGTATACAGTACGTAGCCTTTACTGTAGCCTCTTCATAATGCAtcagtatttatttactaattccAGAAATCCGAGAGGACGTGGAGTCAGAGTCTCGCGCTCATGTCTGGTTTGTACAATTGATTTCCTGCTGAAGTGAAGGAAGGTTAAAGCATTATTACTAAACCCTGTTCATCTCTTTAA
>XM_034312864.1
GTGTGGGCGGGGCTATATTATGGGCTGTTAGAGGTGAAATGGCGCTCGGCGCGGTATTTTAAACAATCCGATTCGTTTCTGAAGCGAGCTGCGGAAAATGTCGCTGCGCCGAGTCGCAATCATCCGCGCATGAATGAAGCAAAAACAGCGTCCATCGTCCCAGAAATCGGCTGTGACAGAGATTTCGGCAAAGTGTAAGGATTTGCGGTGTTGCTCCTCTGCGTGTTGTTCAGTGCGAAGCAATATgatattagcattagcatgctaacgctaacgctaatgctaacgctaaaGCGGtgacggagtgtgtgtgaaagcatgGACGTGGTGTCTCCTGAACTGAACAGCATCCTCCCTGATGAGATCATGGACACCGAGGCCATGGCCATGGAGGAGGACCCCCCTGCCGAGACGCCGGCTCCGTCCTCCCACTCGGCCGCCGAGCCGGCTCAGGTTCCCATGGAAACGGAGGTGCCCGAGATCGTCAGCTTGTGTCCCGCTACCGCGCCGACGCAGAAGACGGAAGCTCTGACCACCCTGACTGCGACGGACTCCACGCTGTGCGGCATCAGCGCCGGGACTCAGCTCGTCGTCACCTCTTCTTCCTCCGCTGGCCCCAAGATGGCCACCGGTACCGTCGCCGTGACCACCGCGCAGCCCGGCAGTCCCGTAGTGGGTCAGAGCGTCGCCAAGATCCCGGCCCCGTTCGCGCCCACCAGCCCGGCCAACCACCAGCTCATCATCAATAAAGTGGCGGCGGACGGCAAGTCTCCCGCCGCCGCAGTGCTCAAGCAGGAAGGGCAGAAGCTCCTGGTCACGGGTCTGAGTAAAACGGGGCAGCCGATCGTCCTGGCGCTGCCCAACACCTGGAGCAAACCGGCCACGTCTCAGGGCACAGGAACCGACGTGAAGACGCAGCCCACGCAGTTCAAAGTGGTTTCAGCAGGAACAAAGCCTGTGATTGGAGTACAGGCTGTgagctcagccaatcagctgctGGGATCCTCCTCTCCTCTACAGGCCCAGCAACTCAAaactgtacagATTACGAAAAAGACCCCGGTCTCCACAGCAGGGCCCATGATCACCAAGCTGATCATCACGAAGGCCCTGAACAACAAGGGCCTGACGAGCCAAGCCACCGTCACTCCTGTGGTCACAGGACGGGTTCTGACCCAGACTACACCAGTGACCCCTCCACGGACCATCACCATCGGAGAGACCATCAGCACGACGCCACAGTCGCTCTCCTCctccagcagcagcaacagcaaagTGGCCATTTCTCCTCTTAAATCTCCCAGCAAGGTAACCGTGGCCGCTCAGCCTCCTAACTCTCCCCAGAAACCCGTGGCCGTGCCTCTGAACGTGGCTCTGGGTCAGCAGATCCTCACCGTGCAGCAGGCGGCTTCTACTTCACCAGCTAAAGCAGGAAGCAGTCAGTCCACTGCCcagACAGTGAAGCCGGTGCAAACTGTGGCAGTGGGCGGAGTCAACACACCGCAGTTTAAGACCATCATCCCCTTGGCCACACCCCCAAACGTTCAGCAGATCCAGGTACCCGGCAGCCGCTTCCATTACGTACGCTTGGTCACGGCCACCACCGGGAACACGGCCCAGACGGCCAACGCCAGCACGACCACCAACCCCACCACCATCCAGCCTGCCAAGCCCATGATGATGAACACGGCTGCAGTGAGGATGTCCGTTCCCATCGTTCCAGCTCAGACGGTCAAGCAGGTGGTGCCGAAGCCGATGACATCAGCAGCTCAGGTGGTGAGCAGCAGTCAGACGCAGCAGCGGCTCATCATGCCGGCCGCGCCGCTCCCTCAGATCCAGCCCAACCTAACCAACCTGCCCCCGGGCACCGTGCTCGCTCCGGCTCCGGGCTCGGGGAACATGGGCTACGCCGTGCTGCCGGCCCAGTACGTcacacagCTCCAGCAGTCGACGTTTGTGACTTTGGCGAGCAGCTCGGGTTTCTCCGCCCCCAGCTCCATCCAGACCCAGGCCAGACTTCCTCTGAacggTTTATCTCCATCAGAGACGACGTCCAGACCACGAAAGCCTTGCAACTGCACCAAGTCACAGTGCCTCAAACTATATTGTGACTGCTTTGCAAACGGAGAATTTTGTAACAACTGCAACTGTGTTAATTGCTTCAACAACCTCGACCATGAGAGCGATCGCCTTAAAGCCATTAAGGCTTGTTTGGACAGAAACCCGGTGGCCTTCAAGCCTAAGATCGGTAAAGGGAAAGAAGGAGAATCGGAGAGGAGACACAGTAAAGGCTGCAACTGTAAGAAGTCGGGgtgtttaaaaaattactgcGAGTGTTATGAGGCGAAGATCATGTGCTCGTCGATCTGTAAGTGTGTGGGCTGTAAGAACTTCGAGGAGAGTCCTGAGAGGAAGACTCTGATGCACTTGGCCGATGCGGCGGAGGTGCGAGTGCAGCAGCAGACTGCAGCTAAAACCAAACTGTCCTCTCAGATCTCAGACCTGCTGACCAGAACCACACCGGCCATCAGCAGCGGGGGGAAGTTGCCGTACACGTTCGTGACGAAGGAGGTTGCCGAGGCGACGTGTGACTGTCTCCTGGAGCAGGCGAGGAAGGCGGAGCGTTATAACCAGCCTCAGACGGTGGCAGAGAGACTGATCCTGGAGGAGTTTGGTCACTGTCTGCGCAGAATCATCAGCTCTGCTGCTAAAGCCAAGACGGACTGCTCCATCAACTGCTAG

Function

symbol description
lin54 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human LIN54 (lin-54 DREAM MuvB core complex component).

NR:

description
PREDICTED: protein lin-54 homolog

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007049 cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K21776 LIN54; protein lin-54

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312863.1 True 3333 mRNA 0.56 14 24259708 24274253
XM_034312864.1 False 2742 mRNA 0.58 14 24260402 24274253

Neighbor

gene id symbol gene type direction distance location
LOC113543977 NA coding downstream 65835 24118023 ~ 24193873 (-)
LOC117599328 LOC107690397,LOC107716059,LOC107572820 coding downstream 88494 24165377 ~ 24171214 (-)
ptbp3 ptbp3,LOC107658670,LOC107744247 coding downstream 164387 24041031 ~ 24095321 (-)
ak3 ak3,LOC107658667,LOC107685112,LOC107744244,LOC107713310 coding downstream 303658 23944375 ~ 23956050 (-)
exd3 exd3 coding downstream 324338 23873693 ~ 23935370 (-)
srek1ip1 NA coding upstream 32199 24306452 ~ 24309825 (-)
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding upstream 103932 24378185 ~ 24454955 (-)
trim23 trim23,LOC107658681 coding upstream 190844 24465097 ~ 24477076 (-)
sgtb sgtb,LOC107558703,LOC107667268,LOC107548671,LOC107705058 coding upstream 226609 24500862 ~ 24509560 (-)
smc5 smc5,LOC107726549,LOC107734934 coding upstream 384555 24658808 ~ 24697852 (-)
G274489 NA non-coding downstream 12151 24245196 ~ 24247557 (-)
LOC113543934 NA non-coding downstream 42030 24216715 ~ 24217678 (-)
LOC117599329 NA non-coding downstream 133501 24125158 ~ 24126207 (-)
G274425 NA non-coding downstream 150260 24108470 ~ 24109448 (-)
G274421 NA non-coding downstream 155606 24103011 ~ 24104102 (-)
G274771 NA non-coding upstream 217213 24491466 ~ 24492114 (-)
G274781 nln non-coding upstream 239035 24513288 ~ 24651673 (-)
G274804 NA non-coding upstream 271947 24546200 ~ 24547152 (-)
G274810 NA non-coding upstream 290389 24564642 ~ 24617704 (-)
G274819 NA non-coding upstream 316987 24591240 ~ 24591960 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other downstream 6396 24251548 ~ 24253312 (-)
nrarpa nrarp,nrarpa other downstream 396440 23859305 ~ 23863268 (-)
G274342 slc27a4 other downstream 457424 23798359 ~ 23802284 (-)
LOC113544130 rusc2 other downstream 3052538 21189969 ~ 21207170 (-)
drg1 drg1,LOC107744129,LOC107567440,LOC107713382,LOC107555524 other downstream 3478634 20772560 ~ 20781074 (-)
LOC113544170 plac8 other upstream 23223 24297476 ~ 24301032 (-)

Expression


Co-expression Network