uvrag (uvrag,LOC108411119,LOC102207598)


Basic Information

Item Value
gene id uvrag
gene name uvrag,LOC108411119,LOC102207598
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 796839 ~ 865864 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312866.1
AGGAAGGATTTTGGCCCAATCAAGGTCGGACAATGGCGCCGTCAGGGAGACTTTAGTTTTGTTTATGCCGCTGTGTTCTCAGATtaactgctcttttctttctttgctggaCTCCTCGGTAAAAGTGGTGGATGTGGATGTGAAGGAAGGCTTGTCCGCGGGGATGAGTGATCTGGGATGAAAAGATAAATGACGGATAATGATGAACTCGGTTTGGGATCTTGCTCTCGGATCCACTCCTGTCAATAACCCCGGAGCTGCAGCTTCCAGATCCGTGCATGTTGAGCTCACATCCCAGCAGAGGCGTTTGCGGCACCTGAGGAGCATCGCCGCGAGGAACATCGTGAACAGAAACCACTCTCCGCTGCTGGACACCTACTTCACGCTGCACCTGTGTTCAGACGATCGCATCTCTAGAGattTTTACAAGAGCGAGGTGATCCGAGACTCGCTGaacCCGACATGGCGCAGTTTGGACTTCGCCATGCTGCCGGACCTGTTGGACACGTCTGTGTCGTGTTTCGTGGTTCGGATTTGGGGCGGACGAGAAGAACAGTACCAACTGCTGATAGAGTGGAAGGTGAACCTGGACGGCCTGAGATACACCGGACAACAGatCCGGTCTCGGTGTCCTAATGAGATCATATTTGGGCTGAATGATGGATACTATGCAGCAGATCTGGATCAGAAGgAGAACTCTGAGAGGAAGAAGAACTCGTTACTGCAGGTGGACCAGAGCTCTGTGAGGAACTCGTACAGCGTCTTCTCCCTGCTCAGacTCCACACGGCTCAGAAGGCGATAAAGCAGACGCAGGTTACAGTTCAGAAAATTGGGAAAGAGATCGAGGAGAAGCTCAGAACCACAGCGGCCTGTACAGAAcggaaGAAGGAGCGAGAGTGTATGCAGTTGCGTATCGGTGTGTTACGAAGCgaggtggagagacagaggaaagctctgctgagagagagggagacgctgcagaaagagagagtgctGCTTCAGAAgaaagaggAGGCGTTCAGCTGTAAACACAAGTCTCTGGACTCGGAGCGAGACACTCTCACTGATCTACAGAAGGAGAGCACAGCTAAAAGAGAGCTGTTCCTGAAGTCCAGCGCTCAGCTCACCTTCCGATGTCGTCAGCTCCTCTCTGAACTCTCCTACATCTACCCCATCGACACAAACAATCAGTCAGACTTTGTGATCTgtggtgtaaaaaataaaaaataactctgtGAAGACTTTCAAGcaaaGGATGATGGGAGTGTGGCAGTCGCCCTCGGCTACACGGCACACCTGGTGCTGATGATTTCCTGCTTCCTGCAGATTCCGCTCAGGTATCCCATCATGCACCGGGGCTCTCGCTCGTCCGTCCGGGACACCATCACCGACAAGCTCAGcgagaaggagagagagttCCCTCTTTATCCACGCGGAGAGAGATTCCACTTCGAGTACGGTGTTTACCTGCTCAACAAGAACATagctcagttgcGGTATCAGCACGGTCTCTCCACGCCGGACCTGCGTCAGACTTTACCCAACCTCAAGCACTTTCTAGAACACGGGCTGCTGGTCAGATGtgaTCGTCATCACGTCTCCAGCTCGATCCCGGTCCCCGTTAGATCCCACCTGAGCGTCTCGCAGGTCACTTTCCCCGTCTCTCCGGAAGCGGACAAAAAGAAACGCAGGTCGCAAAAACTCTATGATCCGGTTGTGACCCCTCTCCCCGTCGCCATGGCGACGCAGGAAGCTCCGCCCGACCCTCTGGACGTCAGCGTGGAGCTGGAGAAGCCGCTCGAGGCGGACAGACGAGCTGAAGATGCAGGAACATCAACACCGGAGCCGAGTACTGAACAGTATGATCCGGATGAGGAGAAGATTCCGGAGAGAGACCCGGAACTGCCCGGAGAACCGAGCGAGTCGGAATGCGTGGAGGAAAATTTGCAGCACCCGGGCGCCATGAACGGTTCCGCCGGCGTTCCGGCCGGCGCCGAGGTGTGCTGCTCCGTGGAACAGGCCGAGGAAATCATGGGCACTGAGGCGatgggattagggttaggatcgCGGCCGGATGAGTTCCCGTGCATCCCTGTGGAACACGCCGTGGCCGTAGAGTGCGACGATCAGGTTCTCGGAGAACTGGAGAACTTTCAGGAGTTCTCAAAACGCATCTATGCTCTGAGCGAGAACCCGTCCTGCTTCAGACGGCCACGCAAGAACTCTGATAAATAaccagaggtcaaaggtcaccagGTAGGCCTTTACCTTCACACCTGACTGCATTGAACAGACATTACATACAGaggtatattattattattattattattattattattattattattaggaaatATCTGGAATATTTGCACTCTAACc

Function

symbol description
uvrag Predicted to enable SNARE binding activity. Acts upstream of or within melanocyte differentiation. Predicted to be active in endosome and lytic vacuole. Orthologous to human UVRAG (UV radiation resistance associated).

NR:

description
PREDICTED: UV radiation resistance-associated gene protein

GO:

id name namespace
GO:0010508 positive regulation of autophagy biological_process

KEGG:

id description
K21249 UVRAG; UV radiation resistance-associated gene protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312866.1 True 2383 mRNA 0.53 16 796839 865864

Neighbor

gene id symbol gene type direction distance location
dgat2 dgat2,LOC107746984,LOC107691652 coding upstream 2746 781523 ~ 794093 (+)
mogat2 mogat2,LOC107751377,LOC107579037,LOC107691703 coding upstream 21561 763077 ~ 775278 (+)
umodl1 umodl1 coding upstream 52848 730018 ~ 743991 (+)
atg101 atg101,LOC107751375,LOC107686213,LOC107589731,LOC107691654,LOC107577413 coding upstream 77513 716205 ~ 719326 (+)
rabgef1 rabgef1 coding upstream 160833 623386 ~ 636006 (+)
and3 LOC108277318 coding downstream 226215 1092079 ~ 1094333 (+)
trnal-uag_7 NA coding downstream 228987 1094851 ~ 1094932 (+)
trnal-aag_10 NA coding downstream 233508 1099372 ~ 1099453 (+)
pcolcea LOC108277346 coding downstream 253666 1119530 ~ 1128252 (+)
fgf11b fgf11b,LOC103026543,LOC108443340,LOC107677987,LOC103363034 coding downstream 494846 1360710 ~ 1387400 (+)
G261183 NA non-coding upstream 1469 794200 ~ 795370 (+)
G261190 NA non-coding upstream 23578 771258 ~ 773261 (+)
G261176 NA non-coding upstream 83771 711424 ~ 713068 (+)
G261173 NA non-coding upstream 90557 705543 ~ 706282 (+)
LOC117599335 ppm1e non-coding upstream 112475 657405 ~ 684364 (+)
G261201 NA non-coding downstream 4090 869954 ~ 873772 (+)
G261415 NA non-coding downstream 13813 879677 ~ 941189 (+)
G261431 LOC108277356 non-coding downstream 104049 969913 ~ 1055910 (+)
G261508 LOC108277042 non-coding downstream 300615 1166479 ~ 1204782 (+)
G261510 NA non-coding downstream 337136 1203000 ~ 1214496 (+)
G261178 NA other upstream 69114 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 140630 603726 ~ 656209 (+)
bcl7ba bcl7b other upstream 227656 507279 ~ 569183 (+)
prdm15 prdm15,LOC107578663,LOC108413920,LOC106512200,LOC106511912,LOC107728867,LOC107686138 other upstream 296653 482388 ~ 500186 (+)
G261104 NA other upstream 316128 444767 ~ 480711 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other downstream 235925 1101789 ~ 1112278 (+)
G261503 NA other downstream 340127 1205991 ~ 1237132 (+)
ponzr2 LOC108277330 other downstream 546122 1411986 ~ 1419489 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 1878532 2744396 ~ 2747317 (+)
pcp4a NA other downstream 1929627 2795491 ~ 2817263 (+)

Expression


Co-expression Network