tbl2 (tbl2,LOC107734476,LOC107691705,LOC107686137,LOC107728824)


Basic Information

Item Value
gene id tbl2
gene name tbl2,LOC107734476,LOC107691705,LOC107686137,LOC107728824
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 501222 ~ 507099 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312901.1
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagggagactcacagagagagagagtgtgtgtgtgagagtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgagtgtaacgTGGCAGACTTGGACATGGAGTTTGTTGCGCTCGTGGCCGTTTCTCTGATTATTGGAGCGCTGATTATTTTAGTCGCTGTAGCAGTTAGCAAGAAAGCTAAACAGAGTGAAGAAGAGGAGCAGAACAACAAAGCAGctggAGAGAGCTCGGTGAAGGCGTCTGCCGCCAAGAAGCAGAAAGCGCAGCAGCGTCCACGGAAGGAGAAACCTCAGCAGCACACGTTCTCACACCCGCTGCTCGCCTCCTCGCTGAAGAgtcacagtggtgcagtgaCGTGTCTGGACTTCAGCAGTAACGGTAAATATCTGGCCTCCTGCGCTGACGATCGCACCGTCCGCATCTGGAGCACTAAAGACTTCCTGGTGAGAGATCATAAATGTCTGAGGGCCAACGTCGAGTACGACGACGCCACGCTCGTCCGCTTCAGCCCCGACTGccgAGCCTTCATCACGTGGCTGGCGAACGGAGAGACGATCCGTATCTTTAAGATGACCAAGAAGGACGACGGTACGTTCAGTTTTAAAGCGGCGCCGGAGGATTTTCCCCAGAGACACAAAGGCATCGTCATCGCCATGGCCATCGCAGACACAGGGAAGTTTATAATGACGGCGTCGGTGGACACCAGCATCATCATCTGGGATCTGAAAGGAGAAGCGCTGGCCTCCATCAACACCAACCAGATGACCAACTCCCACGCTGCGGTCTCTCCCTGCGGcaggttcgTGGCAGCGTGTGGCTTCACTCCGGATGTTAAGGTTTGGGAAGTGTGTTTTGCTAAAACAGGAGAGTTTAAAGAAGTGACTCGAGCGTTCGACCTCAAAGGGCATTCAGCCGGAGTGTACAGCTTCGATTTCTCCAACGACTCCcgcagGATGGTGACGGTGTCTAAAGACGGCACGTGGAAGCTCTGGGACACGGATGTGGAGTACAAGAAGCAGCAGGACCCGTACCTGCTCCGGACTGTACCATGTCGGGTATCGGAGGGGAGTCGTATCGCTCTGTCGCCGGACGGTCGCGCGGTCGCCGTGTCTAGCGGTCGAGACATTTACATGTACAGCGCGAGCTCGGGGGAGCTGGAGGAGGAATTCCACAACGTCCACAGCGAGGACATCACCGACCTCAAATTCGACATTAACAACCGTTTCCTGGTGAGCAGCGGAGACCGCGCCATCCGGGTCTTCCACAACGTGACGGGTTACCGCGCCGCCATCGCCGACATGCAGGCCCTGCTGAAGAAGAGCACCAACGCCGGCGTGAAGCAGCGACTGCAGCAGCAGATCACCGACGCCCAGACCGCGCTGGACGCcatcaccaacacacacaacaactgACCGCCGCGTTTCGGTCTGTGTTTGAGTGGATGCGGCATGCTGCTTTTaacgaattaaaaaaaaaaaagtgtgtttataA

Function

symbol description
tbl2 Is expressed in yolk syncytial layer. Orthologous to human TBL2 (transducin beta like 2).

NR:

description
PREDICTED: transducin beta-like protein 2

GO: NA

KEGG:

id description
K23325 TBL2; transducin beta-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312901.1 True 1522 mRNA 0.55 7 501222 507099

Neighbor

gene id symbol gene type direction distance location
LOC113523717 c2cd2 coding upstream 24631 460262 ~ 476591 (+)
il2rga LOC108276805 coding upstream 149294 341671 ~ 351928 (+)
LOC113538163 LOC108276802 coding upstream 255804 226364 ~ 245418 (+)
znhit2 znhit2 coding upstream 431834 66588 ~ 69388 (+)
mrpl49 mrpl49,LOC107580894 coding upstream 434932 63779 ~ 66290 (+)
cux1a LOC108276869,LOC106568027 coding downstream 68984 576083 ~ 612550 (+)
kctd7 kctd7,LOC106603469 coding downstream 108731 615830 ~ 621347 (+)
rabgef1 rabgef1 coding downstream 116287 623386 ~ 636006 (+)
atg101 atg101,LOC107751375,LOC107686213,LOC107589731,LOC107691654,LOC107577413 coding downstream 209106 716205 ~ 719326 (+)
umodl1 umodl1 coding downstream 222919 730018 ~ 743991 (+)
G261106 NA non-coding upstream 77464 422871 ~ 423758 (+)
G261099 NA non-coding upstream 79182 418689 ~ 422040 (+)
G261090 NA non-coding upstream 173754 327262 ~ 327468 (+)
G261068 htatsf1,LOC108444522 non-coding upstream 190673 285248 ~ 310549 (+)
G261101 NA non-coding downstream 10225 517324 ~ 615120 (+)
LOC117599335 ppm1e non-coding downstream 150306 657405 ~ 684364 (+)
G261173 NA non-coding downstream 198444 705543 ~ 706282 (+)
G261176 NA non-coding downstream 204325 711424 ~ 713068 (+)
G261190 NA non-coding downstream 264159 771258 ~ 773261 (+)
prdm15 prdm15,LOC107578663,LOC108413920,LOC106512200,LOC106511912,LOC107728867,LOC107686138 other upstream 1036 482388 ~ 500186 (+)
G261104 NA other upstream 20511 444767 ~ 480711 (+)
ska2 ska2,LOC108276801 other upstream 64924 379020 ~ 436298 (+)
LOC117599405 NA other upstream 189236 311476 ~ 311986 (+)
fgf13b fgf13b,fgf13,fgf13a,LOC108276808,LOC105907432,LOC107693932,LOC107720625,LOC107548853,LOC107084161,LOC107560535 other upstream 234449 254946 ~ 266773 (+)
bcl7ba bcl7b other downstream 180 507279 ~ 569183 (+)
trim37 trim37,LOC107691657 other downstream 96627 603726 ~ 656209 (+)
G261178 NA other downstream 218728 725827 ~ 727725 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other downstream 594690 1101789 ~ 1112278 (+)
G261503 NA other downstream 698892 1205991 ~ 1237132 (+)

Expression


Co-expression Network