slc27a4 (slc27a4,LOC107658662,LOC107744240,LOC107685116,LOC107713315)


Basic Information

Item Value
gene id slc27a4
gene name slc27a4,LOC107658662,LOC107744240,LOC107685116,LOC107713315
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23789432 ~ 23809829 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312902.1
CACTCAGCGCTTAGTGCCTGCGAACAGGGAAGAGCGGGTTTAGCTAAGAAAATTATAAGGTCATTTTGAATTACCGGGAGCTACAGTAAATCTGCcatttccaaagaaaaaaaaaattaataatagtaataataataataataatggagcAGGTGAAACGGCGACGGATCGCAGCGCGCGCATGATTCACCGGAattgatatttaaataaaaaaagaaagggaaaaaaacccagTATAGAGGTTTGGTTATAAGCTGATCAAGGTGGGAATTGAACAGAAAGGTGGTGCTAATACATCGTGACCGACTGCGGATACACACGAGGCGAGgatgttgCGCCTGGCATGTACCACCGTCCTGCTCTTCGTGCTCAGGCTGGTCCTGACTTTGCCCTGGCTCCAGGTTCTTCCTGCCGTCCTCATCTTCTTCCTGGGAACCGGAGGATGGAACTCGCTGCGTGTGTTTATGAAGACCATCAGCCGAGACCTGCATGCGGCCGTGGTGCTGCTGAAAGTGAAGCTGAACGTGAAGCGACACCTGCGCGAGTCTAACACCATCCCCAAGATCTTCGCCCAGACGGTACGGAAGTACGGCGACAAGACGGCGCTGATCTTCGAGGGCACGGGCGAGCGGTGGAGCTTCAGGCAGCTGGACGAGTACTCGAACCGCGTGGCCAACCTGCTGCACGAGCGCGGCTTCAGGGAGGGCGACGTGGTGGCTCTGTTCATGGAGAACCGCTCGCAGTACGTGGGTCTGTGGCTGGGCATGGCCAAGATCGGCATCGAGGCGGCGCTCATCAACTTCAACCTGCGTCTGGAGGCCCTGGTGCACTGCGTCAACATCTCCAACGCCAAAGCCGTGGTGTTCGGCAGCGAGCTGACCAAAGcgatGTGTGAGGTGCACAGCTCCATGGGGAAAACCGTAAAGCTCTTCTGTTCTGGTGACTGGGATCCTGAACGAGTACCTGAAGGAACCGAGTGTTTGGAGCCGCTCCtccaggccacgcccacacacaAGCCCAGCCACCCACAGCGCGGCTTCACCGATCGTCTCTTCTACATTTACACATCTGGAACAACTGGAATGCCCAAAGCTGCCATCGTCGTCCACAGCAGgtattaCCGTATGGCTGCTCTGGTGTATTACGGTTTCAGGATGCGGTCGGATGACGTGCTGTACGACTGCCTCCCGCTTTATCACTCAGCAGGGAACATCGTGGGCGTCGGTCAGTGTCTGATCCACGGCATGACCGTCGTCATCAAGAGGAAGTTCTCAGCGTCCAAATTCTGGGAGGATTGCATCAAATACAACTGCACGataGTGCAGTATATCGGTGAGATCTGTCGTTATTTGTTGAATCAGCCGCTGCGGGATGTGGAGCAGCGTCACTGTGTGCGCATGGCGCTGGGTAACGGTCTGCGTCAGTCCATCTGGGAGGAGTTCATGCAGCGCTTTAACGTCCCGCAGATCGCCGAGTTCTACGGAGCCACCGAGTGTAACTGCAGCCTTGGCAACTTCGATAACAAGaccgGTGCGTGTGGCTTTAACAGCCGTATCCTGCCCTTCGTCTACCCCATCCGTCTGGTCAGAGTGGACGAGGAGACCATGGAGCTCATCAGAGGACCTGATGGAGTGTGTATACCGTGTGGTCCAGGTGAACCGGGTCAGCTGGTGGGCAGAATCATCCAGAACGACCCGCTGAGACGCTTCGACGGCTACGTTAACCAGTCCGCCACCAGTAAAAAGATCGCACAGAACGTCTTCAAGAAAGGGGACAGCGCCTACCTGTCAGGAGACGTGCTGGTGATGGACGAGTTCGGCTACATGTACTTCAGAGACCGTACGGGAGACACATTCCGCTGGAAGGGTGAGAACGTCTCCACTACTGAGGTGGAAGGAACGCTGAGCCGCCTGCTGGAGATGAAGGACGTGGTGGTGTACGGTGTGGAGGTTCCAGGCGCGGAGGGAAAAGCCGGCATGGCGGCCATCGCTGACCCGGACCACGCCACAGACCTGGGGAAGTTCAGCAGGGAGCTGGAGAAGGCGCTGCCCCCCTACGCCCGCCCGGTGTTCCTGCGCTTCCTGCCTGAGGTCAACAAGACCGGAACCTTCAAGTTCCAGAAGACGGAGCTACGCCGTGACGGCTTCGACCCGACCGTGGTGTCCGATAAGCTCTACTTCCTGGACTGCACTAAAGGATGCTACGTTGAGCTGGACGCCGAACTCCACCGTAGCATCGTCTCGGGGAAGCAAAAAGTATAAAGAAACCACTGCCGACTCCGCCCACTTCCTCAACCTTCCATCATCACACCCCTCCCTAGGAACCTTCCAACGCCTCGCCCCTCGTTACCTCAGCAACCGCAGTGAGGGGCAGCAGGAGCAG

Function

symbol description
slc27a4 Predicted to enable long-chain fatty acid transporter activity and long-chain fatty acid-CoA ligase activity. Predicted to be involved in lipid transport; response to nutrient; and very long-chain fatty acid catabolic process. Predicted to act upstream of or within fatty acid transport. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane; microvillus; and plasma membrane. Is expressed in intestinal bulb. Orthologous to human SLC27A4 (solute carrier family 27 member 4).

NR:

description
PREDICTED: long-chain fatty acid transport protein 4

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K08745 SLC27A1_4, FATP1_4; solute carrier family 27 (fatty acid transporter), member 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312902.1 True 2382 mRNA 0.56 13 23789432 23809829

Neighbor

gene id symbol gene type direction distance location
swi5 swi5 coding upstream 2649 23781356 ~ 23786783 (+)
fam163ba fam163b,LOC107595554,LOC107713289,LOC107685121,LOC107597608 coding upstream 12399 23755117 ~ 23777033 (+)
sardh sardh coding upstream 67914 23683550 ~ 23721518 (+)
cercam cercam,LOC107744239,LOC107597609,LOC107685123 coding upstream 112802 23662619 ~ 23676630 (+)
urm1 urm1 coding upstream 149085 23624137 ~ 23640347 (+)
ptgdsa lcn2 coding downstream 5847 23815676 ~ 23831525 (+)
ambp ambp coding downstream 25338 23835167 ~ 23845395 (+)
ugcg ugcg,LOC107571241,LOC107558686,LOC107713309,LOC107658668 coding downstream 161609 23971438 ~ 24011050 (+)
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding downstream 423931 24233760 ~ 24252068 (+)
cops4 cops4,csn4,LOC107685106,LOC107558694 coding downstream 466253 24276082 ~ 24296725 (+)
G274161 NA non-coding upstream 112205 23675643 ~ 23677227 (+)
G273900 NA non-coding upstream 390901 23396808 ~ 23398531 (+)
G273880 NA non-coding upstream 455883 23286000 ~ 23333549 (+)
G273865 NA non-coding upstream 509643 23261046 ~ 23279789 (+)
G273719 NA non-coding upstream 653600 23135579 ~ 23135832 (+)
G274186 NA non-coding downstream 42168 23851997 ~ 23852218 (+)
G274192 NA non-coding downstream 49995 23859824 ~ 23860703 (+)
G274193 NA non-coding downstream 59025 23868854 ~ 23869197 (+)
G274239 NA non-coding downstream 135787 23945616 ~ 23946507 (+)
G274289 NA non-coding downstream 297819 24107648 ~ 24110738 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 403325 23281561 ~ 23386107 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 514779 23244560 ~ 23274653 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other upstream 643865 23049812 ~ 23145567 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 1123862 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 1414557 22369256 ~ 22374875 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 128149 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 293244 24103073 ~ 24112853 (+)
LOC117599389 NA other downstream 416325 24226154 ~ 24232819 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other downstream 670770 24480599 ~ 24498642 (+)
erbin erbin,erbb2ip other downstream 720149 24529978 ~ 24639642 (+)

Expression


Co-expression Network