ambp (ambp)


Basic Information

Item Value
gene id ambp
gene name ambp
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23835167 ~ 23845395 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312903.1
aggaggaggaggaaggtgCTGTTGTTCTCTCATCATTACAGACTAGAACCTCATTTGGATccgagacagacagaaatgcagGCTGTGGTTACGGTTCTCCTGCTGGCCGGTGTGGCTCTGATCCACGCCGGACCTCTGCCTCCAGAACCGCTCCTCCAGACCCAGGAGAACTTCAACCTGGACCGGTTCTTGGGGAAGTGGTATGACATCGCCTCAGCCTCCAACTGCCCCTGGAGGAAGAAATACAAAGGAGATTCTCCGATCGGATCTCTGGAGCTGCAGCGTAGTGACTCTCCAAACTCCCTGAACATGACGCGCATCATGtccagGCATGGCGTGTGTAAGATGATCACCGGTAACTACGTGAAGACTGAAACTCCGGGAAGATTCTACTACCACAGTGTCAAATGGTCAGCTGATGTGGACGCCTACGTGGTGCACACGAACTACGACGAGTATGCGCTGGTGGTGAAGTTCAAACAGCAGCGTGGAGGAAACAAGACCACCTCGGTCAAACTGTACGGACGTAAGAAGGAACTGCGGCCCACGCTGTTGGAGGACTTTAAGACCCTGGTGGCTGAACAGGGAATGAGCGCAGATACCATCTCTATTAAACAGAACAAaggAGATTGTGTTCCAGGAGAAAAAACAGCTCCACAGACTGAGGTTcagCCGAGGACGAGACGATCGCTGGTGCTGCCTCCATCTGATGAAGGTTCTGCAGACGACACACCCATATTCAAAGGAGAAGactccTGTACAGGTGCCCCAGACCCTGGTCCATGTTTCGGGATCCTCCATCGCTACCACTACAACTCCTCCATCATGGCGTGTCAGATGTTTGAGTACGGAGGCTGTTTGGGCAACCAGAACAACTTCCTCACTGAGAAGGAGTGTCTGCAGACCTGCCGcactgaggCTGCCTGTCGGCTCCCGATAGACGTCGGTTCGTGTAAAATGTCGCTGCACTTCTGGGCTTTCGACTCGACCAACGGAAAGTGTGTGTCCTTCAACTACGGAGGGTGTGAGGGCAACGGCAACCGCTtctacacacagaaagagtGTGAGGAGTACTGCGGCGTGAGCAGAGacggTGATGAGGAGTTCCTCAAGATGAAATAAAGACGAGCGGAAAAATGCcagtaaataaaataccaaACAGTagctgagctttttttttttcctttactgtagaaataagaaataatacagaaaaaaacatgttcagcATCACCACTGTTTTAGAGATAAATTCTGCTGATGTGTAGAAACTTTTGCTAAGATTTTCtgggaaataaaatattaaatattaaatatactgttGGAAATTCACTCAAACTTTCTCACATGACCTTCATCGTTAACATGCTGTATGAGagacaataataaaacatattaaaggTGTTATAAGTGTTAATACATAGTGAAGCTACGCACCTGGGTGTTTAatgagtttaaataaataaaacacaacaaacga

Function

symbol description
ambp Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to act upstream of or within protein-chromophore linkage. Predicted to be located in extracellular region. Predicted to be active in cell surface and plasma membrane. Is expressed in liver and yolk syncytial layer. Human ortholog(s) of this gene implicated in acute kidney failure and adult respiratory distress syndrome. Orthologous to human AMBP (alpha-1-microglobulin/bikunin precursor).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0036094 small molecule binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K23620 AMBP; protein AMBP

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312903.1 True 1480 mRNA 0.48 10 23835167 23845395

Neighbor

gene id symbol gene type direction distance location
ptgdsa lcn2 coding upstream 3642 23815676 ~ 23831525 (+)
slc27a4 slc27a4,LOC107658662,LOC107744240,LOC107685116,LOC107713315 coding upstream 25338 23789432 ~ 23809829 (+)
swi5 swi5 coding upstream 48384 23781356 ~ 23786783 (+)
fam163ba fam163b,LOC107595554,LOC107713289,LOC107685121,LOC107597608 coding upstream 58134 23755117 ~ 23777033 (+)
sardh sardh coding upstream 113649 23683550 ~ 23721518 (+)
ugcg ugcg,LOC107571241,LOC107558686,LOC107713309,LOC107658668 coding downstream 126043 23971438 ~ 24011050 (+)
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding downstream 388365 24233760 ~ 24252068 (+)
cops4 cops4,csn4,LOC107685106,LOC107558694 coding downstream 430687 24276082 ~ 24296725 (+)
cwc27 cwc27,LOC107744252,LOC107713303 coding downstream 464636 24310031 ~ 24359123 (+)
ppwd1 ppwd1 coding downstream 611641 24457036 ~ 24465100 (+)
G274161 NA non-coding upstream 157940 23675643 ~ 23677227 (+)
G273900 NA non-coding upstream 436636 23396808 ~ 23398531 (+)
G273880 NA non-coding upstream 501618 23286000 ~ 23333549 (+)
G273865 NA non-coding upstream 555378 23261046 ~ 23279789 (+)
G273719 NA non-coding upstream 699335 23135579 ~ 23135832 (+)
G274186 NA non-coding downstream 6602 23851997 ~ 23852218 (+)
G274192 NA non-coding downstream 14429 23859824 ~ 23860703 (+)
G274193 NA non-coding downstream 23459 23868854 ~ 23869197 (+)
G274239 NA non-coding downstream 100221 23945616 ~ 23946507 (+)
G274289 NA non-coding downstream 262253 24107648 ~ 24110738 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 449060 23281561 ~ 23386107 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 560514 23244560 ~ 23274653 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other upstream 689600 23049812 ~ 23145567 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 1169597 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 1460292 22369256 ~ 22374875 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 92583 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 257678 24103073 ~ 24112853 (+)
LOC117599389 NA other downstream 380759 24226154 ~ 24232819 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other downstream 635204 24480599 ~ 24498642 (+)
erbin erbin,erbb2ip other downstream 684583 24529978 ~ 24639642 (+)

Expression


Co-expression Network