pstpip2 (pstpip2,LOC107744171,LOC106568404)


Basic Information

Item Value
gene id pstpip2
gene name pstpip2,LOC107744171,LOC106568404
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20125535 ~ 20154803 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312904.1
ACTAGCTGCTGGTTTGAGACGCGTCCCGCGCTTCCTCCGTGCTGTGCTGCTTAATAACAGTGTGAAAGTCATCAGCAGTTCACTCAGTCCAGACCATCACCATGAGGGAGCTGCACTTTAAGGACAACTTCTGGAACAATGAGCTGACCAGCACTGGGGGCTATGATGCCATCCTCCAGCACCTCAATGATGGCAAGAGGACGTGCAAAGAGATCGAAGACTTCATGAAAGCCAGAGCTTCAATTGAGGAGAAATATGCGAAGGAGCTGCTGGGTTTGTCCAAGAAGGTGTGCGGCCACAATGAAATGAAcacGCTGAAGCGATCACTTGATGTTTTCAAACTGCaaacTGAACAGGTGAGTATGTCTCACTTGCATCTGGCCCAGGCCATGAGGGATGAAGCCAAAAAGTTAGAGGAGttcagagaaaaacagaaagaagcaAGAAAGAGGgtggAGCAGCAGATGGATGTGCTGCACAAACAGAAAGCGATACAGTACAAGAAAACCATGGAGacTAAGAAGACCTATGAGCAGAAGTGTCGTGATAAAGAAGACGCAGAGCAGACGATGAACCGAAACGCCACCACCAGCAACGCCAAACAGCAGGAGAAGCTCTACGCCAAAGCACAGCAAGCCAAACAGTCAGCAGAGGAAGCAGACAGAGTTTATAACCAGAACGTGCTTGCACTGGGAAAGATGCGAGAGGAATGGCTGAATGAGCATGTAAAAGCATGTGAGATATTCGAGAAACAAGAAGTGGAGAGGATCAGTGTGTTGCGGAACGTCGTGTGGACTCACCTGAACCAGCTCTCGCAGCAGTGTGTGACCAGCGATGAGCTCTatgaggaagtgaggaagtCTCTGGAGCAGTGTGACATTCAGGAGGACATCGAGCACTTCGTCAACCTGAGGAGGACTGGAGACAAACCTCCAGCTTCTGTACCGTACGAGAATTTCTACAGCAATCAGAGAACAGTGCCAAGCAGACAGCCGCCGTCCGTCACCAGGAGAGGAGCCGCGCCTCCACTGCCAAACACAGAAGGTGATGTGGTGTATTCGACTATAAATGATCCAGGATACAGTGTAATTCGATACTAACAAGCAGGAAGCAGGTGAGGACGCAAGTGCAGAGAATCCTCCCCGCTGTGTCGATGTTAACTAATCCATGTGGTGTTCAGTAGGTGTCACTTAGAATTCACCCCAAACATTcagcacataataataataagaagaagaagaagaagaagaatagagTAGAGAACAGAGTAAGAACACCACACTGTATTTCACTACAATGATACAGCCATTGTgtaatttatttcctttttttttttttttttttttttttgtctatttgaATATCAgaatcatataataataatatagtaattaAACCTTCAGAAAATTCTACAATATCAGTAGATATGATGAACCATTGTAAATGTACACTGGATTTTACTCTTAGTGGGCGTGTTCGTTTGCGAGTTCTGTCTTGTTAGATTATTCTGAGAGTGTCATGAGAGACACTGTTGtctttcttatttattgttttattgcattCAGTTATTTaaagttgtcttttttttatttactgtaattcAAATGGGCATTGTGTTAATGTCAGGTACAAAACACCAAAAAAGACATTTGGTAATTTTTCAGATGGTATTTTGTTATAATATCAAACTgataaaatgtgttatgaaaAGTTCATGTCAGGTTTCtggtttatctgtttatagacAGAAAGTAGCAAGAACATTTGTTGTGATTTAATAGCTGTTAAACTGCCCTGTACTGCCTGCTTTAATAAAATCTGATTGTCACCATGA
>XM_034312905.1
ACTAGCTGCTGGTTTGAGACGCGTCCCGCGCTTCCTCCGTGCTGTGCTGCTTAATAACAGTGTGAAAGTCATCAGCAGTTCACTCAGTCCAGACCATCACCATGAGGGAGCTGCACTTTAAGGACAACTTCTGGAACAATGAGCTGACCAGCACTGGGGGCTATGATGCCATCCTCCAGCACCTCAATGATGGCAAGAGGACGTGCAAAGAGATCGAAGACTTCATGAAAGCCAGAGCTTCAATTGAGGAGAAATATGCGAAGGAGCTGCTGGGTTTGTCCAAGAAGGTGTGCGGCCACAATGAAATGAAcacGCTGAAGCGATCACTTGATGTTTTCAAACTGCaaacTGAACAGGTGAGTATGTCTCACTTGCATCTGGCCCAGGCCATGAGGGATGAAGCCAAAAAGTTAGAGGAGttcagagaaaaacagaaagaagcaAGAAAGAGGgtggAGCAGCAGATGGATGTGCTGCACAAACAGAAAGCGATACAGTACAAGAAAACCATGGAGacTAAGAAGACCTATGAGCAGAAGTGTCGTGATAAAGAAGACGCAGAGCAGACGATGAACCGAAACGCCACCACCAGCAACGCCAAACAGCAGGAGAAGCTCTACGCCAAAGCACAGCAAGCCAAACAGTCAGCAGAGGAAGCAGACAGAGTTTATAACCAGAACGTGCTTGCACTGGGAAAGATGCGAGAGGAATGGCTGAATGAGCATGTAAAAGCATGTGAGATATTCGAGAAACAAGAAGTGGAGAGGATCAGTGTGTTGCGGAACGTCGTGTGGACTCACCTGAACCAGCTCTCGCAGCAGTGTGTGACCAGCGATGAGCTCTatgaggaagtgaggaagtCTCTGGAGCAGTGTGACATTCAGGAGGACATCGAGCACTTCGTCAACCTGAGGAGGACTGGAGACAAACCTCCAGCTTCTGTACCGTACGAGAATTTCTACAGCAATCAGAGAACAGTGCCAAGCAGACAGCCGCCGTCCGTCACCAGGAGAGGAGCCGCGCCTCCACTGCCAAACACAGAAGGTGATGTGGTGTATTCGACTATAAATGATCCAGGATACAGTGTAATTCGATACTAACAAGCAGGAAGCAGAGAATCCTCCCCGCTGTGTCGATGTTAACTAATCCATGTGGTGTTCAGTAGGTGTCACTTAGAATTCACCCCAAACATTcagcacataataataataagaagaagaagaagaagaagaatagagTAGAGAACAGAGTAAGAACACCACACTGTATTTCACTACAATGATACAGCCATTGTgtaatttatttcctttttttttttttttttttttttttgtctatttgaATATCAgaatcatataataataatatagtaattaAACCTTCAGAAAATTCTACAATATCAGTAGATATGATGAACCATTGTAAATGTACACTGGATTTTACTCTTAGTGGGCGTGTTCGTTTGCGAGTTCTGTCTTGTTAGATTATTCTGAGAGTGTCATGAGAGACACTGTTGtctttcttatttattgttttattgcattCAGTTATTTaaagttgtcttttttttatttactgtaattcAAATGGGCATTGTGTTAATGTCAGGTACAAAACACCAAAAAAGACATTTGGTAATTTTTCAGATGGTATTTTGTTATAATATCAAACTgataaaatgtgttatgaaaAGTTCATGTCAGGTTTCtggtttatctgtttatagacAGAAAGTAGCAAGAACATTTGTTGTGATTTAATAGCTGTTAAACTGCCCTGTACTGCCTGCTTTAATAAAATCTGATTGTCACCATGA

Function

symbol description
pstpip2 Predicted to enable actin binding activity. Predicted to act upstream of or within cell migration and cytoskeleton organization. Orthologous to human PSTPIP2 (proline-serine-threonine phosphatase interacting protein 2).

NR:

description
PREDICTED: proline-serine-threonine phosphatase-interacting protein 2 isoform X1

GO: NA

KEGG:

id description
K20124 PSTPIP2; proline-serine-threonine phosphatase interacting protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312904.1 True 1834 mRNA 0.43 15 20125535 20154803
XM_034312905.1 False 1816 mRNA 0.42 15 20125535 20154803

Neighbor

gene id symbol gene type direction distance location
sub1a sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117 coding upstream 1826 20117525 ~ 20123709 (+)
itga1 itga1 coding upstream 15234 20050618 ~ 20110301 (+)
LOC113543999 LOC108277114 coding upstream 101821 20018366 ~ 20023714 (+)
LOC117595711 NA coding upstream 319740 19792704 ~ 19805795 (+)
LOC113544133 NA coding upstream 325017 19797773 ~ 19800518 (+)
mtrex skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 coding downstream 27851 20182654 ~ 20214754 (+)
hvcn1 hvcn1 coding downstream 148927 20303730 ~ 20313257 (+)
sftpba LOC108276523 coding downstream 175683 20330486 ~ 20342383 (+)
mpx LOC100335032 coding downstream 454012 20608815 ~ 20623941 (+)
loxa lox,LOC108277371,LOC107562574 coding downstream 493004 20647807 ~ 20661095 (+)
G272246 NA non-coding upstream 117338 19966127 ~ 20008197 (+)
LOC113544143 NA non-coding upstream 300303 19817178 ~ 19825232 (+)
G271923 NA non-coding upstream 640631 19482497 ~ 19484904 (+)
G271884 NA non-coding upstream 789655 19333846 ~ 19335880 (+)
G271853 NA non-coding upstream 896112 19229061 ~ 19229423 (+)
G272249 plpp1 non-coding downstream 68674 20223477 ~ 20226693 (+)
G272305 NA non-coding downstream 85091 20239894 ~ 20240346 (+)
G272347 NA non-coding downstream 154788 20309591 ~ 20309876 (+)
G272361 NA non-coding downstream 254920 20409723 ~ 20465046 (+)
G272360 NA non-coding downstream 287896 20442699 ~ 20447678 (+)
gfra2b gfra2 other upstream 182030 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 276709 19848755 ~ 19848826 (+)
LOC117599326 NA other upstream 295267 19825962 ~ 19830268 (+)
G272180 NA other upstream 300303 19793912 ~ 19825232 (+)
LOC113543969 NA other upstream 338704 19782427 ~ 19786831 (+)
G272367 LOC108276637 other downstream 243477 20398280 ~ 20398947 (+)
G272374 NA other downstream 268596 20423399 ~ 20429143 (+)
G272408 NA other downstream 385522 20540325 ~ 20542954 (+)
LOC113544125 LOC100304632 other downstream 1204716 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 1321284 21476087 ~ 21478880 (+)

Expression


Co-expression Network