snx24 (snx24)


Basic Information

Item Value
gene id snx24
gene name snx24
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20663103 ~ 20670487 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312907.1
CTCTAGACTGCGCATGCGCGACTGAACACTCTCCCGTATCACTAGGTTTGTTTTCGTATCGGCCGCCCGCCAGTTTCCACTGAACCTGACAGCCAGCGACGGGACACCAGGGCATACATTTTACTccttattttcttatttgatACATGAAttttataagtatatatatttcaagTTTCTAGAATGCATCCTGTATCCGTGTCTATCCCTTCTTTTCGTTCAGAAGACAGCGCGTCGGAAAAAGGCTACACAGTTTTTAAGATCGAGGTGTTAACGAGCGGGCGGCAGCACACTGTGGAGAAGCGCTACAGTGAGTTTCATGCTCTGCACAAAATGCTGAAGAAGATCATTAAACCTCCGGAGCTTCCATCAAAGCACGTGAGGAACTGGATCCCCAAAGTTCTGGAGCAGAGAAGACATGGTCTTGAGCTTTACCTTCAGACTATAATCATGGAAAACGAGGTTCttcctaaaatatttctggATTTCCTCAACATCCGCCACCTCCCGTCCCTGCCAAAGGCCGAGAGTTGTGGGTCGTTTGAAACTGAATCCGAGGACTCATGTAAACTGACACATCAGCCAGCCCTGCTCTTCCTGAGGGACCCCTATCTGCTTCCTGCCACTAACGACACGTTTTCGAACGTCGTCACTGAAGGCGTGATTCATGGAATATTCTACCCAGACCTGCAGCCGAGGtagaccagcgctctctccagCCAAAATATAACACCTCAGTTTCATGGACAAAGAGGCTTTTATACTCTAATcatttacacaaacactacagGAATCTAGTCACAAAGTCCAcactctttgttttttctttttgttgggtttttttgcaTCTGTAAGGCCCAACATTGTGAATTTATAGAGCAAGAAAATAGTCTTCTTGTTCCatccaagaaaaaaacaaactgacatAATTGTGCTACATTGTGCTGTGAAAAATCTTTACTACGTCAGAGAGAAGAGCtgggtgatttaaaaaaataaataaaaaaataaataaattcaaattaataCTATTCAGTTAAACTATTCAAttatttactgatatttttCATAGtctagaaacatttttaaacatcatctaAGATATAGGTTTATCGAAATACTGATAATTTGCAATTTTAGCATTCAgtggatttttctttattttacatttctgttaacATTTATCCTGGTCCAGAATTTTGCTCCGCCCACTGGCCTGAACAGAGCTGCTCAGCCTTTTCCTTAAAACGTAACTCACAAGGCAAACATACTTGCAGCAGAAAGACTGGTGTTGGTTGATGAGGGAAGGGAAACGACTGGCAATGTGTTCACTGTGAGTGCTGTTCACCTTACAGACAACAGAGGGCgctaaatattacaaactgctcctttaaatatACAGAAGATATGTAGATGTAGATTAAACAGCAACATTTGGCTTTTATATGAATAGCACTAGACTCACGATGCAAGAAACCCCGCCTTTTGTCTGGGTTTATTGGTCGGTGCATCTAACCAGTCCCAGTTTTTTCCCCAGGCATGCTGCGATTGGCTGCCGGCAATGTGTGGAAGATTGTATCTGACCTCCGAGAGTTCATCTGACCAACTGACAATATTGAAATTtcatagattaaaaaaaaaaagtaccagaTTTAATGGTATTGCTAAATATTGATTATCACCCAGCTCTGTCAgaccttttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggtgcttcATTTACAGATCATTAATATAGCCTAACTGTTACAACTCATGACCCGTACCTGTTCAATAGCGAGGGATATACTGACCGTAGAGAGGTGAAATATTTCCTGTTTGAACCAAACCTACTTTTAACAACTGCAGAGTGTTCACTGAGCCTTTATACTCAACATTCTTCCACTGACAAGGTTGGAAAACTTACCTTAACTGTTGTATCACCAGTCATGGCATTTATGAAGAAGGGAAACTAATCACGAACTCTCAAGAATCTCTGATTAATTACTGCAGCTGCTAGAAACTGTGAAAGAGAAGTTTATCTGAGTGTATAGTTTACTGGTCTCGATGTCCAGCACTACATGAGGGAGAAATAGGGCTTGGTTTTAAGTGAGACTCAGCGAGACAGGATTCACTTCCTTCTTCGTTCACTTGAGGTGCATGCAATCAAATTTACGCTTCTAAAAGAACATttgggaaataataataataataataataataatttacccCAAACATAGCCAGTCAGCCAAGACGTGTTTGGCGTCACCTGTTTGCTTCTTGGAGCTATGAAGTAGCTTTTTTTAGTATTTGACTTGATGTCATTTTTGTGACCTCAGTGCATTCGacacaaagtggggaaaaacattGACGCCTCCTTGTTCGTCTTTTCTTAGTAACAACCTAGCGAGCTAATTGTGATGAATAGTGTATATTCTCCTCAAActgcaaactgtatagtcagtgatatagatttaacaagcgaatatgtctgtatgttgattgctctaaaacaaatatttgtataatttatttaaaggtaagaagtgctactttgtttacttttgatGCTGTGAGAAGCCATGTCGATTTGACGTCACGCAGTAAACTAGGAAATAACTCGTGGTTGAGAAGACCATCCCAAGTTGACAACTAGGAATTTCAATTTGAGGAGGCATTTTCTTTGGttggaggttgggaattacaagtCACCTCGAGTCGAAAGCAGCATATAAAGATGAGCAACGCCTTCCCATGTAGCTGAACACTGGAATATTATAAGGGCGGCCATGTTGGATAACTGGAATCACTTTTCTCTGCACCTTTTAGAGCTGTAGTAGAAAACTGGAAGATGATAGTAGGTAGATAGATCATATAGTTCCTCTTTAAACTTTTATAAATAGACAGTAATATTgccatttatgattttttttttttatactgcgCAGTCGTGAGAAGCAAGTATATGAAGACTTGgccattacttgttagcaacaatagcatcatag

Function

symbol description
snx24 Predicted to enable phosphatidylinositol phosphate binding activity. Orthologous to human SNX24 (sorting nexin 24).

NR:

description
PREDICTED: sorting nexin-24-like isoform X2

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17941 SNX22_24; sorting nexin-22/24

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312907.1 True 3017 mRNA 0.39 7 20663103 20670487

Neighbor

gene id symbol gene type direction distance location
loxa lox,LOC108277371,LOC107562574 coding upstream 2008 20647807 ~ 20661095 (+)
mpx LOC100335032 coding upstream 39162 20608815 ~ 20623941 (+)
sftpba LOC108276523 coding upstream 320720 20330486 ~ 20342383 (+)
hvcn1 hvcn1 coding upstream 349846 20303730 ~ 20313257 (+)
mtrex skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 coding upstream 448349 20182654 ~ 20214754 (+)
gmcl1 gmcl1,LOC107688092,LOC106564898 coding downstream 14485 20684972 ~ 20697663 (+)
pcyox1 pcyox1 coding downstream 32028 20702515 ~ 20711026 (+)
stard7 stard7,LOC107713384,LOC107687872 coding downstream 79686 20750173 ~ 20761668 (+)
smarcad1b LOC108277297 coding downstream 173838 20844325 ~ 20864250 (+)
ska1 ska1 coding downstream 194078 20864565 ~ 20870543 (+)
G272427 NA non-coding upstream 2809 20565033 ~ 20660294 (+)
G272426 NA non-coding upstream 99039 20562176 ~ 20564064 (+)
G272361 NA non-coding upstream 198057 20409723 ~ 20465046 (+)
G272360 NA non-coding upstream 215425 20442699 ~ 20447678 (+)
G272347 NA non-coding upstream 353227 20309591 ~ 20309876 (+)
G272450 NA non-coding downstream 46024 20716511 ~ 20737500 (+)
G272470 NA non-coding downstream 78874 20749361 ~ 20749647 (+)
G272770 NA non-coding downstream 257135 20927622 ~ 20931583 (+)
G272803 NA non-coding downstream 319856 20990343 ~ 20990551 (+)
G272940 NA non-coding downstream 809413 21479900 ~ 21492672 (+)
G272408 NA other upstream 120149 20540325 ~ 20542954 (+)
G272374 NA other upstream 233960 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 264156 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 719598 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 814277 19848755 ~ 19848826 (+)
LOC113544125 LOC100304632 other downstream 689032 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 805600 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 1252064 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 1698769 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1951941 22622428 ~ 22665570 (+)

Expression


Co-expression Network