cops4 (cops4,csn4,LOC107685106,LOC107558694)


Basic Information

Item Value
gene id cops4
gene name cops4,csn4,LOC107685106,LOC107558694
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24276082 ~ 24296725 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312929.1
GCCCTCAGTGTTCACTGTGAATTGACAGGAAAATGGCGTCTGGTGTGAGGCAGGAGCTCGCGCAGCTCATGAACTCTACCGGTTCTCACAAAGATCTCGTTGGAAAGTATCGTCAGATTCTGGAGAAAGCTCTTCAGTTAACGGATACAGAGCAGCTCGAGGCGCTGAAAGCATTCGTGGAAGCGATGGTCAATGAGAACGTGAGTCTGGTCATATCCCGGCAGCTCCTCACTGACTTCTGCACACACCTCCCGAATCTACCGGACGGCACGGCCAAATCCGTCTACCACTTCACCCTCGAGAAGATCCAGCCCCGAGTCATCTCCTTTGAAGAGCAGGTGGCGTCGATCAGACAGCATTTAGCCACTATATACGAGAAAGAGGAGGACTGGAGGAACGCTGCGCAGGTTTTAGTGGGCATCCCGCTCGAGACGGGACAGAAACAGTACAACGTCGACTACAAGTTAGACACGTACCTGAAGATCGCTCGGCTCTACCTGGAGGACGATGATCCGGTTCAGGCCGAGGCCTACATCAACCGCGCCTCCTTACTGCAGAACGAGTCCACAAACGAGCAGCTGCAGATCCACTACAAGgtgtGCTACGCCAGAGTGTTGGACTACAGGAGGAAGTTTATAGAAGCAGCCCAGCGCTACAACGAGCTTTCTTACAAATCCATAGTGCACGAGAGCGAGCGCCTGGAGGCTCTGAAGCACGCTCTGCACTGCACGATTCTGGCCTCGGCAGGGCAGCAGCGGTCTCGGATGTTGGCTACGCTGTTTAAGGACGAGCGATGTCAGCAGCTGGCTGCGTACGGCATTCTCGAGAAGATGTATCTGGATCGGATCATCCGGGGGAACCAGCTCCAGGAGTTCGCTGCTATGCTGATGCCCCATCAGAAAGCCACCACCGCAGATGGCTCGAGTATCCTGGATCGAGCTGTCATTGAGCACAATCTTCTCTCTGCTAGCAAACTGTACAACAACATCACGTTCGAGGAGCTAGGTGCACTTCTGGAGATCCCACCTGCAAAGGCGGAGAAAATCGCCTCCCAGATGATCACAGAGGGTCGTATGAACGGCTTCATCGACCAGATAGACGGCATCGTCCACTTTGAGACTCGAGAGCCGCTGCCCACCTGGGACAAACAGATCCAGTCGCTCTGCTTCCAGGTGAACAACCTGCTGGAGAAGATCAGTCAGGCAGCACCGGAGTGGACGGCGCAGGCCATGGAGGCCCAGATGTCCCAATAAACCGAGACACGTCCCGACATCGCACCATCTCCACGTCACACTTTACAGAGGCACTTCTAAAGGACGCTTTATGAACGTTACCATGGACACAGCATGTGAAGATCTCCTGAAGTCTGAATAAACCTTTGTGTAAATCTACAAAG

Function

symbol description
cops4 Predicted to be located in nucleus and synaptic vesicle. Predicted to be part of COP9 signalosome. Predicted to be active in cytosol. Is expressed in liver. Orthologous to human COPS4 (COP9 signalosome subunit 4).
csn4 Enables transcription cis-regulatory region binding activity. Involved in several processes, including female germ-line stem cell population maintenance; gamete generation; and protein deneddylation. Part of COP9 signalosome. Is expressed in adult head and organism. Orthologous to human COPS4 (COP9 signalosome subunit 4).

NR:

description
COP9 signalosome complex subunit 4 isoform X1

GO:

id name namespace
GO:0008180 COP9 signalosome cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12178 COPS4, CSN4; COP9 signalosome complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312929.1 True 1396 mRNA 0.54 10 24276082 24296725

Neighbor

gene id symbol gene type direction distance location
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding upstream 24014 24233760 ~ 24252068 (+)
ugcg ugcg,LOC107571241,LOC107558686,LOC107713309,LOC107658668 coding upstream 265032 23971438 ~ 24011050 (+)
ambp ambp coding upstream 430687 23835167 ~ 23845395 (+)
ptgdsa lcn2 coding upstream 444557 23815676 ~ 23831525 (+)
slc27a4 slc27a4,LOC107658662,LOC107744240,LOC107685116,LOC107713315 coding upstream 466253 23789432 ~ 23809829 (+)
cwc27 cwc27,LOC107744252,LOC107713303 coding downstream 13306 24310031 ~ 24359123 (+)
ppwd1 ppwd1 coding downstream 160311 24457036 ~ 24465100 (+)
nln nln,LOC107743138 coding downstream 207138 24503863 ~ 24525223 (+)
apba1b LOC108276879 coding downstream 422004 24718729 ~ 24733547 (+)
G274457 lin54 non-coding upstream 14506 24257907 ~ 24261576 (+)
G274431 NA non-coding upstream 150869 24124736 ~ 24125213 (+)
G274289 NA non-coding upstream 165344 24107648 ~ 24110738 (+)
G274239 NA non-coding upstream 329575 23945616 ~ 23946507 (+)
G274193 NA non-coding upstream 406885 23868854 ~ 23869197 (+)
G274583 NA non-coding downstream 106298 24403023 ~ 24491201 (+)
G274624 NA non-coding downstream 194690 24491415 ~ 24491856 (+)
G274639 NA non-coding downstream 240405 24537130 ~ 24537736 (+)
G274646 NA non-coding downstream 286256 24582981 ~ 24583278 (+)
G274653 NA non-coding downstream 355025 24651750 ~ 24652197 (+)
LOC117599389 NA other upstream 43263 24226154 ~ 24232819 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other upstream 163229 24103073 ~ 24112853 (+)
cdc37l1 LOC108276758,LOC108433523 other upstream 335950 23937978 ~ 23940132 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 889975 23281561 ~ 23386107 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 1001429 23244560 ~ 23274653 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other downstream 183874 24480599 ~ 24498642 (+)
erbin erbin,erbb2ip other downstream 233253 24529978 ~ 24639642 (+)
zfand5b zfand5,LOC108277070,LOC108428885,LOC107742939,LOC107726558,LOC107705050,LOC107667265 other downstream 303137 24599862 ~ 24658701 (+)

Expression


Co-expression Network