LOC113524202


Basic Information

Item Value
gene id LOC113524202
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1098177 ~ 1098309 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402518.2
ACATCAGTGAGGTATATCCTTACCTGTTACCTTAGAAATAAGGTTGCAGAACATGATGATTGGATTCAATGAATGTGTGATTATATTCCGCATTTATCAAGGAACCGCAACACCTTGATGAATCTTGTCTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402518.2 True 133 ncRNA 0.37 1 1098177 1098309

Neighbor

gene id symbol gene type direction distance location
trnas-gcu_6 NA coding downstream 298 1097798 ~ 1097879 (-)
trnat-agu_11 NA coding downstream 2503 1095601 ~ 1095674 (-)
ap4m1 ap4m1,LOC107702797,LOC107720677,LOC107554303,LOC107742404 coding downstream 7646 1081869 ~ 1090531 (-)
foxo1b LOC108277356 coding downstream 16888 1052951 ~ 1081289 (-)
LOC113524167 thap12 coding downstream 91974 999241 ~ 1006203 (-)
tmem88a tmem88,LOC108276534,LOC106608829,LOC106525123 coding upstream 30270 1128579 ~ 1134162 (-)
kdm6bb kdm6b,LOC108277160,LOC105902372 coding upstream 40570 1138879 ~ 1159183 (-)
efnb3a LOC108277042 coding upstream 105523 1203832 ~ 1230875 (-)
gigyf1b gigyf1,LOC108277040,LOC108443343 coding upstream 137232 1235541 ~ 1260050 (-)
LOC117599374 NA coding upstream 238351 1336660 ~ 1337281 (-)
G261676 NA non-coding downstream 44154 969913 ~ 1054023 (-)
G261686 NA non-coding downstream 99876 997641 ~ 998301 (-)
G261355 NA non-coding downstream 222400 657927 ~ 875777 (-)
LOC113524153 NA non-coding upstream 134054 1232363 ~ 1235521 (-)
G261748 NA non-coding upstream 224871 1323180 ~ 1323407 (-)
G261753 NA non-coding upstream 230262 1328571 ~ 1328776 (-)
G261758 NA non-coding upstream 236431 1334740 ~ 1334940 (-)
G261759 NA non-coding upstream 261830 1360139 ~ 1360361 (-)
LOC117599327 NA other downstream 65642 981406 ~ 1032535 (-)
si:ch211-266i6.3 LOC108276750 other downstream 83888 1006914 ~ 1014289 (-)
fhl1b fhl1b,LOC108444522,LOC107718794,LOC107701105,LOC107693928,LOC107548848 other downstream 781852 301010 ~ 316325 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other upstream 167143 1265452 ~ 1410939 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other upstream 677252 1775561 ~ 1780407 (-)
si:ch73-1a9.3 NA other upstream 1581366 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other upstream 1614133 2712442 ~ 2724473 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 1867346 2965655 ~ 2968182 (-)

Expression


Co-expression Network