XLOC_000557 (CU929294.2)


Basic Information

Item Value
gene id XLOC_000557
gene name CU929294.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44968462 ~ 44972926 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000968
ATGTTTGGCACAACCTTCTGCCAGATGGAAAACCGTCTGCTGATGAGTCTTACGGCGCTTCTGCTCATTGATGCTGGACTAGGAATTACAGATCTAAACACAACCAACAACTCTGAAAACAACTCAGCTAATGTAAGCAAAACAATACCTACAACACTAATGGTCCCACAGATTACATGTCCGAAAACTGTTGAAAGGATCACTGAGACAGTAATGGCCTGGCTGAAAGTAAAAGGAAAGAGTCCGTGTGAGGGTCGGGTGTATGTCTATTCCGCTACTCTCGGTGAAAAGCCTTTGTGCTGCTCAAGTCACAAAAGAACCAGCTTGTTGCGTGGACTGTGTAAGGACATGCGGTGTGGAGACTTGAACTCTGTTACTAACTTTAATGAATACAATTCTGGGATTGAGCTCACAAGCAATATGACGTTGAACATCACTCAGTGCTCAGGCCTGAGTATAAGCTGCACAGGTATGTCTGCATACTCATTTAATAGGAATCTGTGTTGGAATGTTCCTCTTGatattatatttactgtaaaaaaaagaagtCTGTAAATAAGCAGTTTTGCGTAggtttgtgatttatgtttttcttCCCtgatttatttctgcttttcaaTTGCATTATGATAGCTTGATCCTTCTTTCATTAACTTTAAaccttaaaaattttaaataagtgacttttatgaaaacttttaatagtttaaagtcatATATTGTCTGGGTAGGGGTTGTATATTATGGCACAAAAATCTTGTAATAAACTACCAgtacattttctttcattttacagacttatttctcccTATATTACTTCTTATACATCGT
>TCONS_00000969
ATGGTCCCACAGATTACATGTCCGAAAACTGTTGAAAGGATCACTGAGACAGTAATGGCCTGGCTGAAAGTAAAAGGAAAGAGTCCGTGTGAGGGTCGGGTGTATGTCTATTCCGCTACTCTCGGTGAAAAGCCTTTGTGCTGCTCAAGTCACAAAAGAACCAGCTTGTTGCGTGGACTGTGTAAGGACATGCGGTGTGGAGACTTGAACTCTGTTACTAACTTTAATGAATACAATTCTGGGATTGAGCTCACAAGCAATATGACGTTGAACATCACTCAGTGCTCAGGCCTGAGTATAAGCTGCACAGATTCGCTTGGAAATGAGTTGGTCGCTTATAAAGCAGTAACTGGCATATTGATCTTCATCCTGGTTTTCATTTTGATTCAGTTCAGTCGCCCCACGATCAAAGTCATCCGAAAAAGATGTGAGTTGGTGAAGTCGCTCTTTAATCTCTTTAATGTTTCTACATGCATGGAATAATGTAACATTTCTGTGTTCGCTTATAATTTTCTGTACAAAGACTgtatttaaaataggcattaaAGATATATAAAGTAAAATCGAGAAGAAATGTTTCAGATGATACACTTTTATAACTCTCCAAACAAGCAAATCGAAGCAAATTACAGAGACTGATCATGTGAACTCTGTGCAGAGCTTCTTAGTCTTGTGTAAAGTCTTTGCGAGTTGTACATTCAGCACGTAGTTATAGAGATGTGGCAGGTGACACACTGAattaaaagtgacattttaatCCCAAAAGACTGAAATAATTTTCCTGTAAGATTTATCTAACATCATTTTAGTGGTCCAATAAAAACAATACGATTTGATTTGTTCTAGCGCTCATGCATGAGGATTTGACAGCTCTGCATGGTTCCTCAGAACATAGTCACACTCATTTTCAACTCAGAAATTTTTTACTCAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117392

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000968 False 831 lncRNA 0.37 2 44968462 44971240
TCONS_00000969 True 932 lncRNA 0.39 2 44970569 44972926

Neighbor

gene id symbol gene type direction distance location
XLOC_000556 vps37c coding upstream 5203 44949909 ~ 44963259 (+)
XLOC_000555 si:dkey-9i23.16 coding upstream 22238 44941031 ~ 44946224 (+)
XLOC_000554 wu:fc21g02 coding upstream 42449 44906517 ~ 44926013 (+)
XLOC_000553 kdm2aa coding upstream 98490 44838706 ~ 44869972 (+)
XLOC_000552 NA coding upstream 132724 44826320 ~ 44835738 (+)
XLOC_000558 CU929294.1 coding downstream 10899 44983825 ~ 44997770 (+)
XLOC_000559 dnaja1 coding downstream 30045 45002971 ~ 45014434 (+)
XLOC_000560 btr01 coding downstream 83445 45056371 ~ 45076434 (+)
XLOC_000561 si:ch211-151p13.8 coding downstream 107971 45080897 ~ 45096935 (+)
XLOC_000562 muc13a coding downstream 148467 45121393 ~ 45135878 (+)
XLOC_000545 NA non-coding upstream 314494 44647908 ~ 44653968 (+)
XLOC_000544 BX511158.1 non-coding upstream 378081 44590267 ~ 44590381 (+)
XLOC_000542 NA non-coding upstream 397593 44567513 ~ 44570869 (+)
XLOC_000541 NA non-coding upstream 402029 44523368 ~ 44566433 (+)
XLOC_000563 AL953855.1 non-coding downstream 197120 45170046 ~ 45170652 (+)
XLOC_000567 NA non-coding downstream 410678 45383604 ~ 45398821 (+)
XLOC_000568 NA non-coding downstream 671840 45644766 ~ 45648246 (+)
XLOC_000573 BX511120.1 non-coding downstream 795490 45768416 ~ 45768530 (+)

Expression


Co-expression Network