LOC113544905


Basic Information

Item Value
gene id LOC113544905
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7549590 ~ 7554579 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404560.2
ATAGCTGTGACGCAATGCTGACGTCTCTCAATATGGCGGAAGCTGTGAGAGTGAAGTTAGCAGTTGATGCTGAGTGGAAATTTGCTGTATGGAGGCTTATGGAGGCTGACTGAGCATTAACATTGCCCTTATGAGACTTAACGTGCTACCTGGATAAATTGCTTAAGCTAGCTAGTTTGGCGTCCATATTGGCCAGTTGCCTAGCAGCAGTGATTCTTCTTTCTGCTTCTTTGCTGTAGGCATATATCTGTGGGGCTAAAAATTCAAAGACTGCCTGAGGTCTGGAACCGAAAGACGTCACCagatgctgggtttcttccctggtgatgctctgcggGGATCTGCAACCAGTGTGGTCTCACTGCAAGTCTCACGCTGCTGGTGGTGAAACATGGGAGAGTGGCTGAATGGAGTGCAGGCTGAGCTGGAGATGGAGAGGCAGGAGATCTTCATGTGGAAAGTGATGCTGAGGAAAAGTGAACAGGAGTTATAACACATTCAACAGGCCAGGCTTGCGCTGACAAGGAGGATGTCATCCAGCCAGGCCAGGTCATGCTGGGAGAAGACAAGGTCGAGCATCTTTCTCACCACCATCAGTCCCAGGATCTGGAATTAGGACACAACCATTTCATCTTAAAATTCTTCAGTTTGATAAGATGTTTAAATATTGAATAGACCAacaagctgaaaatgacaaaatagcaTCTCACAAGTATTTCCATACAATGATTTTCCATTATCTAGGTCATGTTAGATGGCAAATTGTTGAAGATGTTTTGCCTTTCATCTGAAATCCAGTCACCCTGACTTATGTCATGGTGTGTGTAAATCTAATTGTGGTTTTGCTGCTgttattagttaaaaaaaaaaaagttagtttagtttaatctctctctctctctctctctctctctctctctctccttcctacAATTATCTTGTACAACCATCTGGGCACCTTTTggaaattattggcacctttaaCATGTAACCTGTATGCTTAGATTGTATTCTGCTaaatggctaaatgtaaatggtaACTACCTATGACAAGTGGAGTAATATGAAAGGAGAGAAAATTATACCAGTTGGATGACTTCTACTTGACATCAAATACAATACcaatgtattcttttttttctaatgtacAGTAATTCAGGAATCTGGAGGACAGAAAAAAGCATAGCTATTACCATGACA
>XR_004579804.1
ATAGCTGTGACGCAATGCTGACGTCTCTCAATATGGCGGAAGCTGTGAGAGTGAAGTTAGCAGTTGATGCTGAGTGGAAATTTGCTGTATGGAGGCTTATGGAGGCTGACTGAGCATTAACATTGCCCTTATGAGACTTAACGTGCTACCTGGATAAATTGCTTAAGCTAGCTAGTTTGGCGTCCATATTGGCCAGTTGCCTAGCAGCAGTGATTCTTCTTTCTGCTTCTTTGCTGTAGGCATATATCTGTGGGGCTAAAAATGtaatgctttttttccttttctgtatacatatatagtcaggtccataaatatttggacattgacaaaaaaTCAAAGACTGCCTGAGGTCTGGAACCGAAAGACGTCACCagatgctgggtttcttccctggtgatgctctgcggGGATCTGCAACCAGTGTGGTCTCACTGCAAGTCTCACGCTGCTGGTGGTGAAACATGGGAGAGTGGCTGAATGGAGTGCAGGCTGAGCTGGAGATGGAGAGGCAGGAGATCTTCATGTGGAAAGTGATGCTGAGGAAAAGTGAACAGGAGTTATAACACATTCAACAGGCCAGGCTTGCGCTGACAAGGAGGATGTCATCCAGCCAGGCCAGGTCATGCTGGGAGAAGACAAGGTCGAGCATCTTTCTCACCACCATCAGTCCCAGGATCTGGAATTAGGACACAACCATTTCATCTTAAAATTCTTCAGTTTGATAAGATGTTTAAATATTGAATAGACCAacaagctgaaaatgacaaaatagcaTCTCACAAGTATTTCCATACAATGATTTTCCATTATCTAGGTCATGTTAGATGGCAAATTGTTGAAGATGTTTTGCCTTTCATCTGAAATCCAGTCACCCTGACTTATGTCATGGTGTGTGTAAATCTAATTGTGGTTTTGCTGCTgttattagttaaaaaaaaaaaagttagtttagtttaatctctctctctctctctctctctctctctctctctccttcctacAATTATCTTGTACAACCATCTGGGCACCTTTTggaaattattggcacctttaaCATGTAACCTGTATGCTTAGATTGTATTCTGCTaaatggctaaatgtaaatggtaACTACCTATGACAAGTGGAGTAATATGAAAGGAGAGAAAATTATACCAGTTGGATGACTTCTACTTGACATCAAATACAATACcaatgtattcttttttttctaatgtacAGTAATTCAGGAATCTGGAGGACAGAAAAAAGCATAGCTATTACCATGACA
>XR_004579805.1
ATAGCTGTGACGCAATGCTGACGTCTCTCAATATGGCGGAAGCTGTGAGAGTGAAGTTAGCAGTTGATGCTGAGTGGAAATTTGCTGTATGGAGGCTTATGGAGGCTGACTGAGCATTAACATTGCCCTTATGAGACTTAACGTGCTACCTGGATAAATTGCTTAAGCTAGCTAGTTTGGCGTCCATATTGGCCAGTTGCCTAGCAGCAGTGATTCTTCTTTCTGCTTCTTTGCTTCAAAGACTGCCTGAGGTCTGGAACCGAAAGACGTCACCagatgctgggtttcttccctggtgatgctctgcggGGATCTGCAACCAGTGTGGTCTCACTGCAAGTCTCACGCTGCTGGTGGTGAAACATGGGAGAGTGGCTGAATGGAGTGCAGGCTGAGCTGGAGATGGAGAGGCAGGAGATCTTCATGTGGAAAGTGATGCTGAGGAAAAGTGAACAGGAGTTATAACACATTCAACAGGCCAGGCTTGCGCTGACAAGGAGGATGTCATCCAGCCAGGCCAGGTCATGCTGGGAGAAGACAAGGTCGAGCATCTTTCTCACCACCATCAGTCCCAGGATCTGGAATTAGGACACAACCATTTCATCTTAAAATTCTTCAGTTTGATAAGATGTTTAAATATTGAATAGACCAacaagctgaaaatgacaaaatagcaTCTCACAAGTATTTCCATACAATGATTTTCCATTATCTAGGTCATGTTAGATGGCAAATTGTTGAAGATGTTTTGCCTTTCATCTGAAATCCAGTCACCCTGACTTATGTCATGGTGTGTGTAAATCTAATTGTGGTTTTGCTGCTgttattagttaaaaaaaaaaaagttagtttagtttaatctctctctctctctctctctctctctctctctctccttcctacAATTATCTTGTACAACCATCTGGGCACCTTTTggaaattattggcacctttaaCATGTAACCTGTATGCTTAGATTGTATTCTGCTaaatggctaaatgtaaatggtaACTACCTATGACAAGTGGAGTAATATGAAAGGAGAGAAAATTATACCAGTTGGATGACTTCTACTTGACATCAAATACAATACcaatgtattcttttttttctaatgtacAGTAATTCAGGAATCTGGAGGACAGAAAAAAGCATAGCTATTACCATGACA

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404560.2 False 1200 lncRNA 0.42 4 7549590 7554579
XR_004579804.1 True 1270 lncRNA 0.41 4 7549590 7554579
XR_004579805.1 False 1172 lncRNA 0.42 4 7549590 7554579

Neighbor

gene id symbol gene type direction distance location
LOC117599324 il1b coding upstream 114664 7432541 ~ 7434926 (+)
oclna LOC108276968 coding upstream 156110 7384282 ~ 7393480 (+)
marveld2a LOC108276966 coding upstream 167602 7371065 ~ 7381988 (+)
trnam-cau_33 NA coding upstream 179251 7370268 ~ 7370339 (+)
trnam-cau_32 NA coding upstream 179712 7369807 ~ 7369878 (+)
cryba4 cryba4,LOC103045114 coding downstream 63720 7618299 ~ 7620573 (+)
grk3 grk3,LOC108276813 coding downstream 73502 7628081 ~ 7717349 (+)
LOC113544796 myo18b,LOC108276812 coding downstream 163476 7718055 ~ 7770444 (+)
LOC113544706 sez6l,LOC108276519,LOC107741658,LOC107758626 coding downstream 231099 7785678 ~ 7855941 (+)
tpst2 tpst2,ubc coding downstream 300748 7855327 ~ 7858825 (+)
G265270 NA non-coding upstream 10268 7536855 ~ 7539322 (+)
G265019 LOC108277003 non-coding upstream 50288 7495504 ~ 7499302 (+)
LOC117599325 NA non-coding upstream 117247 7431362 ~ 7432343 (+)
G265053 NA non-coding upstream 126579 7422770 ~ 7423011 (+)
G265052 NA non-coding upstream 129346 7420010 ~ 7420244 (+)
G265294 NA non-coding downstream 31032 7585611 ~ 7585902 (+)
G265325 NA non-coding downstream 82307 7636886 ~ 7638066 (+)
G265326 NA non-coding downstream 84399 7638978 ~ 7640736 (+)
G265328 NA non-coding downstream 104948 7659527 ~ 7661080 (+)
G265331 NA non-coding downstream 152821 7707400 ~ 7709793 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other upstream 423344 7116051 ~ 7126246 (+)
G264948 NA other upstream 467149 7066871 ~ 7082441 (+)
LOC113544903 mphosph9 other upstream 1354909 6169893 ~ 6194681 (+)
G264336 NA other upstream 1537688 6008800 ~ 6011902 (+)
triap1 triap1,LOC106568193 other upstream 2468947 5077853 ~ 5080643 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 620935 8175514 ~ 8187611 (+)
LOC113544929 NA other downstream 775126 8329705 ~ 8353841 (+)
G265696 NA other downstream 1079056 8633635 ~ 8639728 (+)
G265807 LOC107756568 other downstream 1114235 8668814 ~ 8669797 (+)
LOC113534874 LOC108276751 other downstream 1702364 9256943 ~ 9264111 (+)

Expression


Co-expression Network