LOC113543934


Basic Information

Item Value
gene id LOC113543934
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24216715 ~ 24217678 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579775.1
TGCACTGATAGTCAGTGTGGGGATCATGTGATCTGCATTGTGTGGCTGCTTGTCTTGGGTCACATGAggcatgtcacatgacacatTAGGAGATTATAAAGTTTGGCTTGTGGAGTTCACACTCTCTTGCTGCTGCCATTTGCCACTGCAACTAGATTCCCGTCATACAGGGTGACTCTAGAACAATGTGTTCCACTCTTCATGAAGGACACAGGTGACTGCGTGGCATTTGAAGGACTTGTGGCCTCCTATTGAGTTGCTGGGCTGCAGACACTCTGCACTGGAGTGCCCCATTTTATCTTCCTGGGTTATTGTGCTGCGGGGAGTATTGAACACTCTTGCAAAGTTCTCTGTACAAGGCCGGATCTGCACCTCACTACTGCTCCTTTCAGTTGGGGGCTGCACTGAGGGGACACTATTTTGGTGTGTACTGGTAACATGCAACACGGTGTGGTATTTTGTAGTGGTAATTACTGaccttgtgtgtgcagtgtttgctACATTGCATGCTTGTATGGTGTTGGGTTtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579775.1 True 529 lncRNA 0.48 4 24216715 24217678

Neighbor

gene id symbol gene type direction distance location
LOC113543977 NA coding downstream 22842 24118023 ~ 24193873 (-)
LOC117599328 LOC107690397,LOC107716059,LOC107572820 coding downstream 45501 24165377 ~ 24171214 (-)
ptbp3 ptbp3,LOC107658670,LOC107744247 coding downstream 121394 24041031 ~ 24095321 (-)
ak3 ak3,LOC107658667,LOC107685112,LOC107744244,LOC107713310 coding downstream 260665 23944375 ~ 23956050 (-)
exd3 exd3 coding downstream 281345 23873693 ~ 23935370 (-)
lin54 lin54,LOC107744261 coding upstream 42030 24259708 ~ 24274253 (-)
srek1ip1 NA coding upstream 88774 24306452 ~ 24309825 (-)
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding upstream 160507 24378185 ~ 24454955 (-)
trim23 trim23,LOC107658681 coding upstream 247419 24465097 ~ 24477076 (-)
sgtb sgtb,LOC107558703,LOC107667268,LOC107548671,LOC107705058 coding upstream 283184 24500862 ~ 24509560 (-)
LOC117599329 NA non-coding downstream 90508 24125158 ~ 24126207 (-)
G274425 NA non-coding downstream 107267 24108470 ~ 24109448 (-)
G274421 NA non-coding downstream 112613 24103011 ~ 24104102 (-)
G274379 NA non-coding downstream 178218 24034309 ~ 24038497 (-)
LOC113544148 NA non-coding downstream 186221 24021787 ~ 24030494 (-)
G274489 NA non-coding upstream 27518 24245196 ~ 24247557 (-)
G274771 NA non-coding upstream 273788 24491466 ~ 24492114 (-)
G274781 nln non-coding upstream 295610 24513288 ~ 24651673 (-)
G274804 NA non-coding upstream 328522 24546200 ~ 24547152 (-)
G274810 NA non-coding upstream 346964 24564642 ~ 24617704 (-)
nrarpa nrarp,nrarpa other downstream 353447 23859305 ~ 23863268 (-)
G274342 slc27a4 other downstream 414431 23798359 ~ 23802284 (-)
LOC113544130 rusc2 other downstream 3009545 21189969 ~ 21207170 (-)
drg1 drg1,LOC107744129,LOC107567440,LOC107713382,LOC107555524 other downstream 3435641 20772560 ~ 20781074 (-)
pmaip1 NA other downstream 4102256 20111448 ~ 20114459 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other upstream 33870 24251548 ~ 24253312 (-)
LOC113544170 plac8 other upstream 79798 24297476 ~ 24301032 (-)

Expression


Co-expression Network