LOC117599329


Basic Information

Item Value
gene id LOC117599329
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24125158 ~ 24126207 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579785.1
aaaaaagaaaggaagaagacaCTGAAACAGAGAACAGCACATCTCTGGTAAACTTGAATAATACAGAGAAGCCTGCTGAAAACACCGGGAATgggaaggagaaaaagaaaaggaccaGGAGAGGAACACGAGGCAAAGGAAGGAagataaattacaaaaagtTCCAGGACAACAAAGcagaagaaGATGAAGCTGAACCTGAAGCTGTAGTGGAGGCTGAagctgaacctgaacctgaacctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579785.1 True 243 lncRNA 0.43 3 24125158 24126207

Neighbor

gene id symbol gene type direction distance location
ptbp3 ptbp3,LOC107658670,LOC107744247 coding downstream 29837 24041031 ~ 24095321 (-)
ak3 ak3,LOC107658667,LOC107685112,LOC107744244,LOC107713310 coding downstream 169108 23944375 ~ 23956050 (-)
exd3 exd3 coding downstream 189788 23873693 ~ 23935370 (-)
dbh dbh coding downstream 379625 23723727 ~ 23745533 (-)
strbp strbp,LOC107744073,LOC107686417 coding downstream 617656 23394533 ~ 23507502 (-)
LOC117599328 LOC107690397,LOC107716059,LOC107572820 coding upstream 39170 24165377 ~ 24171214 (-)
lin54 lin54,LOC107744261 coding upstream 133501 24259708 ~ 24274253 (-)
srek1ip1 NA coding upstream 180245 24306452 ~ 24309825 (-)
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding upstream 251978 24378185 ~ 24454955 (-)
trim23 trim23,LOC107658681 coding upstream 338890 24465097 ~ 24477076 (-)
G274425 NA non-coding downstream 15710 24108470 ~ 24109448 (-)
G274421 NA non-coding downstream 21056 24103011 ~ 24104102 (-)
G274379 NA non-coding downstream 86661 24034309 ~ 24038497 (-)
LOC113544148 NA non-coding downstream 94664 24021787 ~ 24030494 (-)
G274386 NA non-coding downstream 109488 23982172 ~ 24015670 (-)
LOC113543934 NA non-coding upstream 90508 24216715 ~ 24217678 (-)
G274489 NA non-coding upstream 118989 24245196 ~ 24247557 (-)
G274771 NA non-coding upstream 365259 24491466 ~ 24492114 (-)
G274781 nln non-coding upstream 387081 24513288 ~ 24651673 (-)
G274804 NA non-coding upstream 419993 24546200 ~ 24547152 (-)
nrarpa nrarp,nrarpa other downstream 261890 23859305 ~ 23863268 (-)
G274342 slc27a4 other downstream 322874 23798359 ~ 23802284 (-)
LOC113544130 rusc2 other downstream 2917988 21189969 ~ 21207170 (-)
drg1 drg1,LOC107744129,LOC107567440,LOC107713382,LOC107555524 other downstream 3344084 20772560 ~ 20781074 (-)
pmaip1 NA other downstream 4010699 20111448 ~ 20114459 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other upstream 125341 24251548 ~ 24253312 (-)
LOC113544170 plac8 other upstream 171269 24297476 ~ 24301032 (-)

Expression


Co-expression Network