LOC117599333 (cltc,LOC105907438,LOC107701399)


Basic Information

Item Value
gene id LOC117599333
gene name cltc,LOC105907438,LOC107701399
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 9042354 ~ 9044626 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579790.1
CCGGAAATGACTcgtttttctgtattttttatttttttaactcacagttctggacaattaaatctttaatcacaacatttcaaaatggggaaaatgtgaaaaaatctgCATTGCACAAGCCTACCTACCTGCTGTGGTTGTGTAGTTGTAACCTGCCATGGCATTTTTTATGACTTTCCAGGTCTGTTCTATTTACTTGGCTCTATTGTTAACTTCTAGGACCCAGAGGTGCATTTCAAATACATCCAGGCTGCCTGCAAGACAGGCCAGATCAAGGAGGTGGCGCGCATTTGCAGAAAGAGCAACTGTTAAGAACAAGTGTCAAGAACTTCCTGAAGGAGGCTAAACTCACTGATCAGCTGCCTCTTATCATTGTGTGTGACCACTTTGACTTTGTCCATGACCTGGTGCTTTACCTGTACCGTAACAACCTCGAGAAGTACACTGAGAATTATGTACATAAGGTAAACCCTAGCCGCTTGCCAGTGGTGACTGGTGGTCTATTGGATGTAGATTGCTCTGAGGATGTGATCGAACCTGATCTTGGTGGTGAGGGGCCACTTCTCTACAGATGAGCTGGTGGCTGAGGTAGAAAAGAGA

Function

symbol description
cltc Enables several functions, including clathrin light chain binding activity; disordered domain specific binding activity; and low-density lipoprotein particle receptor binding activity. Involved in several processes, including amyloid-beta clearance by transcytosis; negative regulation of hyaluronan biosynthetic process; and receptor-mediated endocytosis. Located in cytoplasmic vesicle; lysosome; and mitotic spindle microtubule. Part of clathrin complex. Implicated in autosomal dominant mental retardation 56.

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030130 clathrin coat of trans-Golgi network vesicle cellular_component
GO:0030132 clathrin coat of coated pit cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579790.1 True 600 lncRNA 0.44 3 9042354 9044626

Neighbor

gene id symbol gene type direction distance location
rnft1 rnft1 coding upstream 310369 8715429 ~ 8731985 (+)
LOC113544932 NA coding upstream 766031 8275047 ~ 8276323 (+)
LOC117595648 NA coding upstream 825086 8200080 ~ 8217268 (+)
cetn3 cetn3,LOC107589032,LOC107602084,LOC107758597,LOC107658563,LOC107689496 coding upstream 1098226 7937228 ~ 7944128 (+)
scarb1 scarb1 coding upstream 1132099 7890041 ~ 7910255 (+)
si:ch211-244c8.4 LOC108277057 coding downstream 27803 9072429 ~ 9076274 (+)
zdhhc20a zdhhc20a,LOC108276908,LOC107743391,LOC108411113,LOC107697429,LOC107589301 coding downstream 90534 9135160 ~ 9151699 (+)
smyd4 smyd4 coding downstream 172154 9216780 ~ 9252133 (+)
uspl1 uspl1 coding downstream 320721 9365347 ~ 9400306 (+)
alox5ap alox5ap coding downstream 389194 9433820 ~ 9441067 (+)
G265981 NA non-coding upstream 68916 8972553 ~ 8973438 (+)
G265928 NA non-coding upstream 116853 8912979 ~ 8925501 (+)
G265910 NA non-coding upstream 161301 8880519 ~ 8881053 (+)
G265906 NA non-coding upstream 162933 8879201 ~ 8879421 (+)
G265904 NA non-coding upstream 170650 8871114 ~ 8871704 (+)
G266010 NA non-coding downstream 10155 9054781 ~ 9054998 (+)
G266017 ptrh2,LOC107744620,LOC107699263,LOC107548881 non-coding downstream 14769 9059395 ~ 9060691 (+)
LOC117599365 NA non-coding downstream 17956 9062582 ~ 9065301 (+)
G266036 NA non-coding downstream 113788 9158414 ~ 9159810 (+)
LOC113535228 NA non-coding downstream 165205 9209831 ~ 9214447 (+)
G265807 LOC107756568 other upstream 372557 8668814 ~ 8669797 (+)
G265696 NA other upstream 402626 8633635 ~ 8639728 (+)
LOC113544929 NA other upstream 688513 8329705 ~ 8353841 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other upstream 854743 8175514 ~ 8187611 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other upstream 1916108 7116051 ~ 7126246 (+)
LOC113534874 LOC108276751 other downstream 212317 9256943 ~ 9264111 (+)
G266161 NA other downstream 291175 9335801 ~ 9336290 (+)
LOC113543674 NA other downstream 375039 9419665 ~ 9424855 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other downstream 659734 9704360 ~ 9762697 (+)
G266868 LOC108276566 other downstream 1524402 10569028 ~ 10570705 (+)

Expression


Co-expression Network