LOC117599346


Basic Information

Item Value
gene id LOC117599346
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23068937 ~ 23073938 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579810.1
tgttaaatgaatgaatggaaaacTGAGAGGATctcaaagctgttttttttttttttttttgacacttaTAACAAAAACTACTACTACGTCATTGTTGCTACTTGTGATTATTAAGTACCATTGCGAGCCcaacacactaaatgtcttcTTGTCttaaggGTGTAAAGAATTTCCTGGATGCTGTGTGACCTGAAGGTTTTACCTTGATCTTGAAAGCAgagatgacaggaaTTCCAGAGCTCTCCATCTCTTCCTcgctcctcttcatcctcttaCACATGGTGCACAGCAGATAGGTGCAGACGAGCAGATAGAGAGCCACGACGAGCCACACCACAGCGCTGAACACGGCGAAGCACAGCAGGTTCCCGTCCATCTCTACTgagcaccagcacacacacacacacacacacacacacacacagatacagagacagcaCAGACGTGTTTGTACAGTTGGCACTAAAGTACATGTGTATATGACAGCGTAATGATGCTTTCAGTCCCGTGCAAACATCAAAATATCATTTAGTCTCTCCTGCGTGAAGGCGAGTGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579810.1 True 558 lncRNA 0.44 3 23068937 23073938

Neighbor

gene id symbol gene type direction distance location
paqr3b paqr3b,LOC108276876,LOC108433513,LOC107713330,LOC107597624,LOC107744080 coding upstream 23859 23040466 ~ 23045078 (+)
antxr2b LOC108276875,LOC108433535,LOC107685134,LOC107597625,LOC107744079,LOC107686426 coding upstream 29388 23019928 ~ 23039549 (+)
rasgef1bb LOC108276874,LOC108433534,LOC107597626,LOC107686427,LOC107595538 coding upstream 52711 23005004 ~ 23016226 (+)
snx18b LOC108276851 coding upstream 111336 22948893 ~ 22957601 (+)
fstb LOC108276855,LOC108433530 coding upstream 205107 22852481 ~ 22863830 (+)
rbm18 rbm18,LOC107686423 coding downstream 30739 23104677 ~ 23121707 (+)
ndufa8 ndufa8,LOC107686420 coding downstream 89771 23163709 ~ 23169517 (+)
si:ch211-243g18.2 LOC108277365,LOC108433518,LOC107744167,LOC107685187,LOC107686498,LOC107713290 coding downstream 146207 23220145 ~ 23232035 (+)
LOC113543956 gpr21,LOC108433543,LOC107686419,LOC101884949,LOC107744074,LOC107597614,LOC107595548 coding downstream 268858 23342796 ~ 23345808 (+)
sh2d3ca sh2d3ca,LOC108277244,LOC108433546,LOC107713320,LOC107597612,LOC107744235 coding downstream 492776 23566714 ~ 23618521 (+)
G273644 NA non-coding upstream 6592 23047921 ~ 23062345 (+)
G273683 NA non-coding upstream 30321 23037409 ~ 23038616 (+)
LOC117599377 NA non-coding upstream 74140 22992542 ~ 22994797 (+)
G273600 NA non-coding upstream 228817 22801081 ~ 22840120 (+)
G273473 NA non-coding upstream 506612 22562104 ~ 22562325 (+)
G273719 NA non-coding downstream 61641 23135579 ~ 23135832 (+)
G273865 NA non-coding downstream 187108 23261046 ~ 23279789 (+)
G273880 NA non-coding downstream 212062 23286000 ~ 23333549 (+)
G273900 NA non-coding downstream 322870 23396808 ~ 23398531 (+)
G274161 NA non-coding downstream 601705 23675643 ~ 23677227 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 403367 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 694062 22369256 ~ 22374875 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other upstream 1034940 21922551 ~ 22033997 (+)
LOC113543995 NA other upstream 1590057 21476087 ~ 21478880 (+)
LOC113544125 LOC100304632 other upstream 1707193 21359519 ~ 21361744 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 170622 23244560 ~ 23274653 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other downstream 207623 23281561 ~ 23386107 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 864040 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 1029135 24103073 ~ 24112853 (+)
LOC117599389 NA other downstream 1152216 24226154 ~ 24232819 (+)

Expression


Co-expression Network