LOC117599395


Basic Information

Item Value
gene id LOC117599395
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7975659 ~ 7977423 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579852.1
CAGCTTGCGCATCGGACATTTCTGCGTTTGTCACTCCAGATGACTTCATGCAATAATGTGTAATGGCATTTGGCATGCGCAACGCGCCGGCTACATTTCAAAGACTTATTAACATCGTACTCACAGGAGTTTCTAACTGTAATGCTTACTTAGATGACCTTGTAATCTACTCtattgattggtcagaacatgTTTCAACCCTTCGTGTTTACACACCTTCAGAATTCTTCTTTGACACTAAATCTTGCCAAATGTGATTTTGGTCAAGCCACAATCATGTATTTGGGCAGAGAAGTGGGTCAAGGACAAGTGAGACCTATAGAGGCGAAGCACCGGTGTATGAAAAAGCCTTCAAGTTGGAGATTGACGCAAGCTCTGTTGGCACGGGCGCAGTGCTTATTCAAGAAGACATTTATGGTCTGTGTTTATTGGCTGACTAGGCTGTCAATCATCATTCTGACGTCATGAAGCTCTGCCAATCCACTGATGTGCCGGCTGGATTTAAAGGCCTCGagttcattgtgtgtgtgcgccacgACAGCGTACCTTGTCCTCCAATGTGGTCAGCAGTCTCGTGTTCGACGCTGGTTGTCTCCAGATGCCTAATGTATCTTGTCTTATGGAGTCGtgctttgtgttgtgtgatttgtttatatttagatttatttatagattcGTTCTTTGGCTAGTGACTTGTATCTAATTTTGTGTGAAAGACTAAGCTGATGTCCATGTTAAGAGTTTTAGTCTTACTATGTGTCAAGTTCAAAGTTAAGAATGCATCCCGGTGCATCGAGCTACGTAACCAAAAACGTCTTTTGTGATAATTCAATCGTTGTTACGCTACCATTTGTTTCTTGATTAGATTAGTTGGTATTTTGATAAATTAGGTTTGCGAGTGTTATGCCACGCTTgtacttttgtttttagtttagAGGAGTTTAATTAGGGCGTCGTATACGCCGAAGATTTCggctttattttcatatttctttttttgttaatcaGTTTAGAGGTTAGTTATaagtattgtttttgttttgtttatttctttgatT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579852.1 True 1058 lncRNA 0.40 3 7975659 7977423

Neighbor

gene id symbol gene type direction distance location
cetn3 cetn3,LOC107589032,LOC107602084,LOC107758597,LOC107658563,LOC107689496 coding upstream 31531 7937228 ~ 7944128 (+)
scarb1 scarb1 coding upstream 65404 7890041 ~ 7910255 (+)
ubc ubb,ubc,LOC107553588,LOC100190459,LOC100194618,LOC105015226,LOC107658630 coding upstream 111516 7860866 ~ 7864143 (+)
tpst2 tpst2,ubc coding upstream 116834 7855327 ~ 7858825 (+)
LOC113544706 sez6l,LOC108276519,LOC107741658,LOC107758626 coding upstream 119718 7785678 ~ 7855941 (+)
LOC117595648 NA coding downstream 222657 8200080 ~ 8217268 (+)
LOC113544932 NA coding downstream 297624 8275047 ~ 8276323 (+)
rnft1 rnft1 coding downstream 738006 8715429 ~ 8731985 (+)
si:ch211-244c8.4 LOC108277057 coding downstream 1095006 9072429 ~ 9076274 (+)
zdhhc20a zdhhc20a,LOC108276908,LOC107743391,LOC108411113,LOC107697429,LOC107589301 coding downstream 1157737 9135160 ~ 9151699 (+)
G265420 NA non-coding upstream 123394 7851915 ~ 7852265 (+)
G265419 NA non-coding upstream 124030 7851370 ~ 7851629 (+)
G265418 NA non-coding upstream 126625 7848803 ~ 7849034 (+)
G265383 NA non-coding upstream 127782 7844793 ~ 7847877 (+)
G265417 NA non-coding upstream 131003 7843789 ~ 7844656 (+)
G265490 hapln1,LOC108261073,LOC108425247 non-coding downstream 5236 7982659 ~ 7986096 (+)
G265520 NA non-coding downstream 117980 8095403 ~ 8097573 (+)
G265544 NA non-coding downstream 211757 8189180 ~ 8189799 (+)
G265553 NA non-coding downstream 219158 8196581 ~ 8253208 (+)
G265564 NA non-coding downstream 282668 8260091 ~ 8260403 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other upstream 849413 7116051 ~ 7126246 (+)
G264948 NA other upstream 893218 7066871 ~ 7082441 (+)
LOC113544903 mphosph9 other upstream 1780978 6169893 ~ 6194681 (+)
G264336 NA other upstream 1963757 6008800 ~ 6011902 (+)
triap1 triap1,LOC106568193 other upstream 2895016 5077853 ~ 5080643 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 198091 8175514 ~ 8187611 (+)
LOC113544929 NA other downstream 352282 8329705 ~ 8353841 (+)
G265696 NA other downstream 656212 8633635 ~ 8639728 (+)
G265807 LOC107756568 other downstream 691391 8668814 ~ 8669797 (+)
LOC113534874 LOC108276751 other downstream 1279520 9256943 ~ 9264111 (+)

Expression


Co-expression Network