LOC117599403


Basic Information

Item Value
gene id LOC117599403
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2343661 ~ 2347385 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579857.1
TGGGAGGGCCTGAAAGCGGGCATGACAATCAGTCTGTCCCTCAGAGAGAGTTTACGTATATTTACCGTTGACGGTAAGAGTCACCACCTTCTCCCCGACTCCGACTCGAGGAACCACGGCCCGGCAGACATATTTCCCAGCATCCTCCTGTTTCACGGCCCTCAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579857.1 True 167 ncRNA 0.56 2 2343661 2347385

Neighbor

gene id symbol gene type direction distance location
pcdh1a LOC108276538,LOC108437809,LOC107678039,LOC107708655,LOC107720713,LOC107564544 coding upstream 290425 1982153 ~ 2053236 (+)
avd LOC108277130 coding upstream 470519 1870659 ~ 1873142 (+)
fgf18b LOC108276546,LOC108437818,LOC103034963,LOC107742373,LOC107687415,LOC107552074 coding upstream 517339 1812599 ~ 1826322 (+)
LOC113524200 NA coding upstream 789972 1552268 ~ 1553689 (+)
LOC113524165 LOC108277141 coding upstream 820515 1512564 ~ 1523146 (+)
smtlb sl,LOC108276625 coding downstream 303269 2650654 ~ 2653366 (+)
LOC113544866 glb1l2,LOC108433266 coding downstream 350859 2698244 ~ 2711113 (+)
slc37a4b slc37a4,LOC108276867,LOC107653717,LOC107743433,LOC107679531,LOC107565261,LOC107758618 coding downstream 373965 2721350 ~ 2728418 (+)
igsf5a NA coding downstream 420167 2767552 ~ 2782425 (+)
gdpd5a LOC108277122,LOC108435822 coding downstream 682889 3030274 ~ 3062807 (+)
G262201 NA non-coding upstream 40110 2303340 ~ 2303551 (+)
G262103 NA non-coding upstream 125815 2217486 ~ 2217846 (+)
G262102 NA non-coding upstream 126476 2216960 ~ 2217185 (+)
G262095 NA non-coding upstream 145586 2197870 ~ 2198075 (+)
G261960 NA non-coding upstream 308196 2035252 ~ 2035465 (+)
LOC117599402 NA non-coding downstream 104632 2452017 ~ 2471013 (+)
G262369 NA non-coding downstream 157694 2505079 ~ 2505296 (+)
G262377 NA non-coding downstream 189972 2537357 ~ 2554404 (+)
G262395 foxred1 non-coding downstream 291823 2639208 ~ 2665470 (+)
G262407 NA non-coding downstream 323338 2670723 ~ 2672573 (+)
ponzr2 LOC108277330 other upstream 924172 1411986 ~ 1419489 (+)
G261503 NA other upstream 1106529 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 1231383 1101789 ~ 1112278 (+)
G261178 NA other upstream 1615936 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 1687452 603726 ~ 656209 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 397011 2744396 ~ 2747317 (+)
pcp4a NA other downstream 448106 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 768784 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 905931 3253316 ~ 3576137 (+)
triap1 triap1,LOC106568193 other downstream 2730468 5077853 ~ 5080643 (+)

Expression


Co-expression Network