trnam-cau_39


Basic Information

Item Value
gene id trnam-cau_39
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 16628824 ~ 16628895 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnam-cau_39
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCGAAACCATCCTCTGCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnam-cau_39 True 72 tRNA 0.60 1 16628824 16628895

Neighbor

gene id symbol gene type direction distance location
trnar-ccu_10 NA coding upstream 10 16628742 ~ 16628814 (+)
trnam-cau_38 NA coding upstream 1949 16626804 ~ 16626875 (+)
trnam-cau_37 NA coding upstream 2698 16626055 ~ 16626126 (+)
trnar-ccu_9 NA coding upstream 2779 16625973 ~ 16626045 (+)
trnam-cau_36 NA coding upstream 3271 16625482 ~ 16625553 (+)
pam pam,LOC107577007,LOC107702561,LOC107737006 coding downstream 41422 16670317 ~ 16744667 (+)
ppip5k2 ppip5k2 coding downstream 120025 16748920 ~ 16787635 (+)
macir c16h5orf30,cunh5orf30,zgc:194281,LOC107665462,LOC107715868,LOC107564120,LOC107740794,LOC107670048 coding downstream 163731 16792626 ~ 16797311 (+)
LOC117599317 lysc coding downstream 173563 16802458 ~ 16805021 (+)
syk syk coding downstream 199267 16828162 ~ 16892899 (+)
G270626 NA non-coding upstream 2466 16625984 ~ 16626358 (+)
G270536 dcp2,LOC107564107,LOC107702577 non-coding upstream 51584 16576363 ~ 16577240 (+)
G270525 NA non-coding upstream 118077 16510543 ~ 16510747 (+)
G270520 NA non-coding upstream 242892 16385030 ~ 16385932 (+)
G270495 NA non-coding upstream 277365 16351248 ~ 16351459 (+)
G270716 NA non-coding downstream 168950 16797845 ~ 16798435 (+)
G270833 NA non-coding downstream 432086 17060981 ~ 17078555 (+)
G270856 NA non-coding downstream 458500 17087395 ~ 17087922 (+)
G270870 NA non-coding downstream 499122 17128017 ~ 17138981 (+)
G270872 NA non-coding downstream 500797 17129692 ~ 17140573 (+)
vps36 vps36,LOC107701118 other upstream 1857751 14762313 ~ 14771073 (+)
scaf4a scaf4,LOC107555128 other upstream 5746559 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 6058119 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 6866127 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 7203969 9419665 ~ 9424855 (+)
trnar-ccu_11 NA other downstream 458773 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 458853 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 459554 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 459634 17088529 ~ 17088600 (+)
trnar-ccu_13 NA other downstream 460332 17089227 ~ 17089299 (+)

Expression


Co-expression Network