trnam-cau_45


Basic Information

Item Value
gene id trnam-cau_45
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18463121 ~ 18463192 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnam-cau_45
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGATGGATCGAAACCATCCTCTGCTa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnam-cau_45 True 72 tRNA 0.60 1 18463121 18463192

Neighbor

gene id symbol gene type direction distance location
trnar-ccu_16 NA coding upstream 10 18463039 ~ 18463111 (+)
trnam-cau_44 NA coding upstream 736 18462314 ~ 18462385 (+)
trnar-ccu_15 NA coding upstream 817 18462232 ~ 18462304 (+)
trnar-ccu_14 NA coding upstream 3257 18459792 ~ 18459864 (+)
trnam-cau_43 NA coding upstream 3965 18459085 ~ 18459156 (+)
sh3bp2 sh3bp2 coding downstream 8341 18471533 ~ 18486927 (+)
vldlr vldlr,LOC107548665 coding downstream 28005 18491197 ~ 18512931 (+)
kcnv2a kcnv2,kcnv2a,LOC108428855,LOC107558705,LOC107726563,LOC107667263 coding downstream 50469 18513661 ~ 18515818 (+)
dusp11 dusp11 coding downstream 100551 18563743 ~ 18570535 (+)
ess2 dgcr14,LOC107758656,LOC107746196 coding downstream 108937 18572129 ~ 18578988 (+)
LOC117599343 NA non-coding upstream 35931 18426072 ~ 18427190 (+)
G271340 NA non-coding upstream 114737 18298122 ~ 18348384 (+)
G271235 NA non-coding upstream 337329 18124822 ~ 18125792 (+)
G271104 NA non-coding upstream 689741 17769769 ~ 17773380 (+)
G271102 NA non-coding upstream 698592 17759550 ~ 17764529 (+)
G271542 NA non-coding downstream 450065 18913257 ~ 18913627 (+)
G271544 NA non-coding downstream 454817 18918009 ~ 18918576 (+)
G271545 NA non-coding downstream 455402 18918594 ~ 18919467 (+)
G271548 NA non-coding downstream 460172 18923364 ~ 18923583 (+)
G271550 NA non-coding downstream 460623 18923815 ~ 18924071 (+)
G271406 NA other upstream 55623 18404269 ~ 18407498 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 1362052 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 1373743 17089307 ~ 17089378 (+)
trnar-ccu_13 NA other upstream 1373822 17089227 ~ 17089299 (+)
trnam-cau_41 NA other upstream 1374521 17088529 ~ 17088600 (+)
G271863 NA other downstream 778517 19241709 ~ 19243905 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other downstream 912900 19376092 ~ 19414627 (+)
LOC113544004 LOC108276941 other downstream 1026014 19489206 ~ 19520777 (+)
LOC113543969 NA other downstream 1319235 19782427 ~ 19786831 (+)
G272180 NA other downstream 1330720 19793912 ~ 19825232 (+)

Expression


Co-expression Network