trnar-ccu_12


Basic Information

Item Value
gene id trnar-ccu_12
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 17088449 ~ 17088521 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnar-ccu_12
GCCccagtggcctaatggataaggCACTGGCCTCCTAAGCCAGGGATTGTGGGTTCAAGTCCCATCTGGGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ccu_12 True 73 tRNA 0.59 1 17088449 17088521

Neighbor

gene id symbol gene type direction distance location
syk syk coding upstream 195550 16828162 ~ 16892899 (+)
LOC117599317 lysc coding upstream 283428 16802458 ~ 16805021 (+)
macir c16h5orf30,cunh5orf30,zgc:194281,LOC107665462,LOC107715868,LOC107564120,LOC107740794,LOC107670048 coding upstream 291138 16792626 ~ 16797311 (+)
ppip5k2 ppip5k2 coding upstream 300814 16748920 ~ 16787635 (+)
pam pam,LOC107577007,LOC107702561,LOC107737006 coding upstream 343782 16670317 ~ 16744667 (+)
enoph1 enoph1,LOC107679042,LOC107702573,LOC107715850 coding downstream 25504 17114025 ~ 17123570 (+)
snx30 snx30,LOC107569385 coding downstream 101434 17189955 ~ 17212123 (+)
plppr1 plppr1,LOC107702599,LOC107653496,LOC107710008,LOC107750956,LOC102776600,LOC106568589 coding downstream 266578 17355099 ~ 17396817 (+)
LOC113544058 epha5,LOC108428864,LOC107702602 coding downstream 464410 17552931 ~ 17609585 (+)
lpar1 lpar1,LOC107554848,LOC107723319 coding downstream 577144 17665665 ~ 17688996 (+)
G270856 NA non-coding upstream 527 17087395 ~ 17087922 (+)
G270833 NA non-coding upstream 9894 17060981 ~ 17078555 (+)
G270716 NA non-coding upstream 290014 16797845 ~ 16798435 (+)
G270626 NA non-coding upstream 462091 16625984 ~ 16626358 (+)
G270536 dcp2,LOC107564107,LOC107702577 non-coding upstream 511209 16576363 ~ 16577240 (+)
G270870 NA non-coding downstream 39496 17128017 ~ 17138981 (+)
G270872 NA non-coding downstream 41171 17129692 ~ 17140573 (+)
G270873 scd5 non-coding downstream 48191 17136712 ~ 17149419 (+)
G270893 NA non-coding downstream 189135 17277656 ~ 17292883 (+)
G270913 NA non-coding downstream 273424 17361945 ~ 17388979 (+)
trnam-cau_40 NA other upstream 630 17087748 ~ 17087819 (+)
trnar-ccu_11 NA other upstream 709 17087668 ~ 17087740 (+)
vps36 vps36,LOC107701118 other upstream 2317376 14762313 ~ 14771073 (+)
scaf4a scaf4,LOC107555128 other upstream 6206184 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 6517744 10569028 ~ 10570705 (+)
trnam-cau_41 NA other downstream 8 17088529 ~ 17088600 (+)
trnar-ccu_13 NA other downstream 706 17089227 ~ 17089299 (+)
trnam-cau_42 NA other downstream 786 17089307 ~ 17089378 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other downstream 10575 17099096 ~ 17101069 (+)
G271406 NA other downstream 1315748 18404269 ~ 18407498 (+)

Expression


Co-expression Network