trnar-ccu_15


Basic Information

Item Value
gene id trnar-ccu_15
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18462232 ~ 18462304 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnar-ccu_15
GCCccagtggcctaatggataaggCACTGGCCTCCTGAGCCAGGGTTTGTGGGTTCGAGTCCTGTCTGGGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ccu_15 True 73 tRNA 0.62 1 18462232 18462304

Neighbor

gene id symbol gene type direction distance location
trnar-ccu_14 NA coding upstream 2368 18459792 ~ 18459864 (+)
trnam-cau_43 NA coding upstream 3076 18459085 ~ 18459156 (+)
parm1 NA coding upstream 42152 18414587 ~ 18420080 (+)
si:dkey-88l16.3 LOC108277154 coding upstream 64195 18372712 ~ 18398037 (+)
LOC113543970 LOC108276577,LOC108262336 coding upstream 90096 18366070 ~ 18372136 (+)
trnam-cau_44 NA coding downstream 10 18462314 ~ 18462385 (+)
trnar-ccu_16 NA coding downstream 735 18463039 ~ 18463111 (+)
trnam-cau_45 NA coding downstream 817 18463121 ~ 18463192 (+)
sh3bp2 sh3bp2 coding downstream 9229 18471533 ~ 18486927 (+)
vldlr vldlr,LOC107548665 coding downstream 28893 18491197 ~ 18512931 (+)
LOC117599343 NA non-coding upstream 35042 18426072 ~ 18427190 (+)
G271340 NA non-coding upstream 113848 18298122 ~ 18348384 (+)
G271235 NA non-coding upstream 336440 18124822 ~ 18125792 (+)
G271104 NA non-coding upstream 688852 17769769 ~ 17773380 (+)
G271102 NA non-coding upstream 697703 17759550 ~ 17764529 (+)
G271542 NA non-coding downstream 450953 18913257 ~ 18913627 (+)
G271544 NA non-coding downstream 455705 18918009 ~ 18918576 (+)
G271545 NA non-coding downstream 456290 18918594 ~ 18919467 (+)
G271548 NA non-coding downstream 461060 18923364 ~ 18923583 (+)
G271550 NA non-coding downstream 461511 18923815 ~ 18924071 (+)
G271406 NA other upstream 54734 18404269 ~ 18407498 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 1361163 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 1372854 17089307 ~ 17089378 (+)
trnar-ccu_13 NA other upstream 1372933 17089227 ~ 17089299 (+)
trnam-cau_41 NA other upstream 1373632 17088529 ~ 17088600 (+)
G271863 NA other downstream 779405 19241709 ~ 19243905 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other downstream 913788 19376092 ~ 19414627 (+)
LOC113544004 LOC108276941 other downstream 1026902 19489206 ~ 19520777 (+)
LOC113543969 NA other downstream 1320123 19782427 ~ 19786831 (+)
G272180 NA other downstream 1331608 19793912 ~ 19825232 (+)

Expression


Co-expression Network