trnar-ccu_9


Basic Information

Item Value
gene id trnar-ccu_9
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 16625973 ~ 16626045 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnar-ccu_9
GCCccagtggcctaatggataaggCACTGGCCTCCTAAGCCAGGgattgtgggttcgagtcccatctggggtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ccu_9 True 73 tRNA 0.60 1 16625973 16626045

Neighbor

gene id symbol gene type direction distance location
trnam-cau_36 NA coding upstream 420 16625482 ~ 16625553 (+)
trnar-ccu_8 NA coding upstream 501 16625400 ~ 16625472 (+)
trnam-cau_35 NA coding upstream 993 16624909 ~ 16624980 (+)
LOC113543669 LOC108276552 coding upstream 31576 16591893 ~ 16594397 (+)
reep5 reep5,LOC108246451 coding upstream 35979 16583036 ~ 16589994 (+)
trnam-cau_37 NA coding downstream 10 16626055 ~ 16626126 (+)
trnam-cau_38 NA coding downstream 759 16626804 ~ 16626875 (+)
trnar-ccu_10 NA coding downstream 2697 16628742 ~ 16628814 (+)
trnam-cau_39 NA coding downstream 2779 16628824 ~ 16628895 (+)
pam pam,LOC107577007,LOC107702561,LOC107737006 coding downstream 44272 16670317 ~ 16744667 (+)
G270536 dcp2,LOC107564107,LOC107702577 non-coding upstream 48733 16576363 ~ 16577240 (+)
G270525 NA non-coding upstream 115226 16510543 ~ 16510747 (+)
G270520 NA non-coding upstream 240041 16385030 ~ 16385932 (+)
G270495 NA non-coding upstream 274514 16351248 ~ 16351459 (+)
G270449 NA non-coding upstream 297201 16328511 ~ 16328772 (+)
G270716 NA non-coding downstream 171800 16797845 ~ 16798435 (+)
G270833 NA non-coding downstream 434936 17060981 ~ 17078555 (+)
G270856 NA non-coding downstream 461350 17087395 ~ 17087922 (+)
G270870 NA non-coding downstream 501972 17128017 ~ 17138981 (+)
G270872 NA non-coding downstream 503647 17129692 ~ 17140573 (+)
vps36 vps36,LOC107701118 other upstream 1854900 14762313 ~ 14771073 (+)
scaf4a scaf4,LOC107555128 other upstream 5743708 10865612 ~ 10882265 (+)
G266868 LOC108276566 other upstream 6055268 10569028 ~ 10570705 (+)
dclk1a dclk1,LOC107728871,LOC107577778 other upstream 6863276 9704360 ~ 9762697 (+)
LOC113543674 NA other upstream 7201118 9419665 ~ 9424855 (+)
trnar-ccu_11 NA other downstream 461623 17087668 ~ 17087740 (+)
trnam-cau_40 NA other downstream 461703 17087748 ~ 17087819 (+)
trnar-ccu_12 NA other downstream 462404 17088449 ~ 17088521 (+)
trnam-cau_41 NA other downstream 462484 17088529 ~ 17088600 (+)
trnar-ccu_13 NA other downstream 463182 17089227 ~ 17089299 (+)

Expression


Co-expression Network