trnas-gcu_6


Basic Information

Item Value
gene id trnas-gcu_6
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1097798 ~ 1097879 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnas-gcu_6
GACGAGGTGGCCGAGTGGTTAAGGCGATGGACTGCTAATCCATTGTGCTCTGCACgcgtgggttcgaatcccatcCTCGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnas-gcu_6 True 82 tRNA 0.59 1 1097798 1097879

Neighbor

gene id symbol gene type direction distance location
trnat-agu_11 NA coding downstream 2124 1095601 ~ 1095674 (-)
ap4m1 ap4m1,LOC107702797,LOC107720677,LOC107554303,LOC107742404 coding downstream 7267 1081869 ~ 1090531 (-)
foxo1b LOC108277356 coding downstream 16509 1052951 ~ 1081289 (-)
LOC113524167 thap12 coding downstream 91595 999241 ~ 1006203 (-)
si:dkey-250d21.1 LOC108276748,LOC108442106 coding downstream 101003 987090 ~ 996795 (-)
LOC113524202 NA coding upstream 298 1098177 ~ 1098309 (-)
tmem88a tmem88,LOC108276534,LOC106608829,LOC106525123 coding upstream 30700 1128579 ~ 1134162 (-)
kdm6bb kdm6b,LOC108277160,LOC105902372 coding upstream 41000 1138879 ~ 1159183 (-)
efnb3a LOC108277042 coding upstream 105953 1203832 ~ 1230875 (-)
gigyf1b gigyf1,LOC108277040,LOC108443343 coding upstream 137662 1235541 ~ 1260050 (-)
G261676 NA non-coding downstream 43775 969913 ~ 1054023 (-)
G261686 NA non-coding downstream 99497 997641 ~ 998301 (-)
G261355 NA non-coding downstream 222021 657927 ~ 875777 (-)
LOC113524153 NA non-coding upstream 134484 1232363 ~ 1235521 (-)
G261748 NA non-coding upstream 225301 1323180 ~ 1323407 (-)
G261753 NA non-coding upstream 230692 1328571 ~ 1328776 (-)
G261758 NA non-coding upstream 236861 1334740 ~ 1334940 (-)
G261759 NA non-coding upstream 262260 1360139 ~ 1360361 (-)
LOC117599327 NA other downstream 65263 981406 ~ 1032535 (-)
si:ch211-266i6.3 LOC108276750 other downstream 83509 1006914 ~ 1014289 (-)
fhl1b fhl1b,LOC108444522,LOC107718794,LOC107701105,LOC107693928,LOC107548848 other downstream 781473 301010 ~ 316325 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other upstream 167573 1265452 ~ 1410939 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other upstream 677682 1775561 ~ 1780407 (-)
si:ch73-1a9.3 NA other upstream 1581796 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other upstream 1614563 2712442 ~ 2724473 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 1867776 2965655 ~ 2968182 (-)

Expression


Co-expression Network