trnas-uga_6


Basic Information

Item Value
gene id trnas-uga_6
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18935132 ~ 18935213 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnas-uga_6
GCTGCGATGGCCGAGTGGTTAAGGCGTTGGACTTGAAATCCAATGGGGTTTCCCCGCGCAGGTTCGAACCCTGCTCGCAGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnas-uga_6 True 82 tRNA 0.61 1 18935132 18935213

Neighbor

gene id symbol gene type direction distance location
trnas-cga_2 NA coding upstream 167 18934884 ~ 18934965 (+)
plpp5 plpp5,LOC108440555 coding upstream 28943 18900339 ~ 18906189 (+)
nsd3 whsc1l1,LOC107687514,LOC107720716 coding upstream 37325 18867607 ~ 18897807 (+)
ggt5b LOC108277204 coding upstream 147545 18760163 ~ 18787587 (+)
setd1ba setd1b,setd1ba,LOC108425171,LOC107689149,LOC107658592 coding upstream 277790 18635792 ~ 18657342 (+)
trnas-uga_7 NA coding downstream 384 18935597 ~ 18935678 (+)
trnas-uga_8 NA coding downstream 694 18935907 ~ 18935988 (+)
trnas-uga_9 NA coding downstream 1676 18936889 ~ 18936970 (+)
trim69 LOC108276850,LOC108440158,LOC103027413,LOC107746217,LOC107658579,LOC107688998 coding downstream 13685 18948898 ~ 18958044 (+)
aak1b aak1b,LOC108276848,LOC108440145,LOC107689018 coding downstream 47920 18983133 ~ 19010793 (+)
G271554 NA non-coding upstream 992 18933911 ~ 18934140 (+)
G271552 NA non-coding upstream 4077 18929522 ~ 18931055 (+)
G271550 NA non-coding upstream 11061 18923815 ~ 18924071 (+)
G271548 NA non-coding upstream 11549 18923364 ~ 18923583 (+)
G271545 NA non-coding upstream 15665 18918594 ~ 18919467 (+)
G271555 pcna,LOC107658578,LOC107688976,LOC107583397 non-coding downstream 2330 18937543 ~ 18940887 (+)
G271557 NA non-coding downstream 7544 18942757 ~ 18943019 (+)
G271540 NA non-coding downstream 22955 18958168 ~ 18960267 (+)
G271568 NA non-coding downstream 25315 18960528 ~ 18960767 (+)
G271569 NA non-coding downstream 26089 18961302 ~ 18961555 (+)
G271406 NA other upstream 527634 18404269 ~ 18407498 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 1834063 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 1845754 17089307 ~ 17089378 (+)
trnar-ccu_13 NA other upstream 1845833 17089227 ~ 17089299 (+)
trnam-cau_41 NA other upstream 1846532 17088529 ~ 17088600 (+)
G271863 NA other downstream 306496 19241709 ~ 19243905 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other downstream 440879 19376092 ~ 19414627 (+)
LOC113544004 LOC108276941 other downstream 553993 19489206 ~ 19520777 (+)
LOC113543969 NA other downstream 847214 19782427 ~ 19786831 (+)
G272180 NA other downstream 858699 19793912 ~ 19825232 (+)

Expression


Co-expression Network